K38343

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38343

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38343

Determination of introduced cDNA(s)

  • J023019K12 - Rice Full-length cDNAs - Original: J023019K12

    full reading [+] show sequence

    Nucleotide sequence: J023019K12 - full reading
    GGCTTCTAGA GCCTCCTCGC GTCTTCTCCT CTCTCATCAA ATCCCCTCGC 
    CCTCCTCTCT TTCCTCCTCC CCAAGAAAAA AAAAGGCTTC ATAGCTCAAC
    CTCCTCGCCG CCGCCGCTCA CCTCCCCTCC CCTCCCATCC CTCCTCCTCC
    CTAGCCCCAG GTCGCTGCTC GGCTCCGCCA TGTACCGCGC GGCCGCCAGC
    CTCGCCTCCA AGGCTCGGCA AGCCGGGAGC AGCGCTCGCC AGGTTGGAAG
    CAGGCTTGCC TTGAGCAGGA ACTATGCTGC CAAGGATATC AAGTTTGGAG
    TTGAGGCCCG TGCTTTGATG CTGAGGGGTG TTGAGGAGTT GGCAGATGCA
    GTCAAAGTGA CAATGGGTCC TAAGGGACGC AATGTGGTTA TTGAGCAGAG
    CTATGGTTCA CCGAAAGTCA CAAAGGACGG TGTGACTGTT GCCAAGAGCA
    TTGAGTTCAA GGATAGAGTC AAGAATGTTG GTGCAAGCCT TGTAAAGCAG
    GTTGCTAATG CGACCAATGA TACTGCTGGA GATGGTACCA CTTGTGCTAC
    TGTATTGACT AAAGCAATAT TTACTGAGGG GTGCAAGTCT GTTGCTGCTG
    GCATGAATGC AATGGATTTA AGGCGTGGTA TTTCAATGGC TGTTGATGCT
    GTTGTAACTA ACCTAAAGGG CATGGCTAGA ATGATCAGCA CATCAGAGGA
    AATAGCTCAG GTGGGCACAA TATCAGCAAA TGGGGAAAGG GAAATTGGTG
    AGCTTATTGC AAAGGCTATG GAGAAGGTTG GCAAGGAGGG TGTAATCACC
    ATTGCGGATG GTAACACCCT TTACAATGAG CTTGAAGTTG TGGAAGGCAT
    GAAACTTGAC AGAGGCTACA TCTCTCCTTA CTTTGTTACC AACCCAAAGA
    CCCAGAAATG TGAACTGGAT GACCCCTTGA TCCTGATACA TGACAAGAAG
    GTTTCGAACC TGCATGCAGT AGTTAAAGTC TTGGAGTTGG CTCTGAAGAA
    GCAAAGGCCT CTGCTGATTG TTGCTGAAGA TGTAGAGAGC GAGGCATTGG
    GTACTCTGAT TATTAACAAG CTTCGTGCAG GCATCAAGGT CTGTGCTGTT
    AAAGCTCCTG GGTTTGGGGA GAACAGGAAA GCAAACTTAC AGGACCTTGC
    GATCCTTACT GGAGGAGAAG TCATAACTGA AGAGCTAGGA ATGAATCTTG
    AGAAGTTCGA GCCTCAGATG TTGGGTACAT GCAAGAAGGT AACTGTATCT
    AAGGACGACA CTGTTATTCT TGATGGAGCT GGAGACAAGA AATCCATTGA
    AGAGAGGGCT GAGCAGATTA GATCTGCAAT TGAGCTAAGC ACTTCTGATT
    ATGACAAGGA AAAGCTACAG GAGCGGTTGG CAAAGCTCTC CGGAGGTGTT
    GCTGTTCTAA AGATCGGAGG AGCCAGTGAA GCTGAAGTTG GTGAGAAGAA
    GGATAGAGTG ACAGATGCAT TGAATGCCAC TAAAGCTGCT GTGGAAGAGG
    GTATTGTACC AGGTGGAGGT GTTGCACTTC TTTATGCATC AAAGGAGCTG
    GATAAATTGC CGACTGCTAA CTTTGATCAA AAGATTGGTG TACAAATCAT
    TCAGAATGCT TTGAAGACAC CGGTGCACAC TATTGCTTCC AACGCAGGTG
    TAGAAGGGGC TGTTGTTGTC GGTAAGCTTT TGGAACAAGA TAACACCGAC
    CTTGGCTATG ATGCGGCTAA AGGTGAATAT GTGGACATGG TGAAGGCTGG
    TATCATTGAC CCACTAAAAG TGATCAGAAC TGCCTTGGTG GATGCTGCAA
    GCGTATCATC TCTGATGACA ACCACGGAAT CCATCATCGT AGAGATCCCA
    AAGGAAGAGA AGGAGGCGCC AGCGATGGGA GGCATGGGTG GAATGGATTA
    CTAATCAACA CCCATTAAAG TAAACTAAAA ACATACTCCT GGGATTTAGG
    ATTTTTTTTG CGGTGCAAGT TCATCGTCGA TGTATTTTTT GTTCTTGTTG
    ATGAGGTGGT TGTCAGACAA TTTTGATTCC ACTGGCGGTA GGACGGGTTG
    GAACGAATAA AATTTTAGTT CAGAGCTAGG AGTTCTTGAG AGCTGAGGAC
    TGCACTTCGA TCAAAATTGA ATCTGACACC TTGTGCCGGA ACATTTTTAT
    GAGCTGATCT GAAAGATTAC GCCTTTTGGC C

    Gene models with high sequence identity

    1. AT3G23990.1 [+] show detail - heat shock protein 60
      E-value: 0; Score: 964.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Chaperonin Cpn60, conserved site 0
    HMMPfam Chaperonin Cpn60/TCP-1 4.7e-117
    HAMAP Chaperonin Cpn60 37.798
    HMMTigr Chaperonin Cpn60 0
    HMMPanther CHAPERONIN-60KDA, CH60 0
    HMMPanther Chaperonin Cpn60/TCP-1 0
    superfamily Chaperonin Cpn60/TCP-1 1.4e-74
    superfamily GroEL apical domain-like 4.3e-62
    superfamily GroEL-intermediate domain like 3.3e-19
    Gene3D no description 3.2e-83
    Gene3D no description 5.7e-33
    FPrintScan Chaperonin Cpn60 1.7e-71
    FPrintScan Chaperonin Cpn60 1.7e-71
    FPrintScan Chaperonin Cpn60 1.7e-71
    FPrintScan Chaperonin Cpn60 1.7e-71
    FPrintScan Chaperonin Cpn60 1.7e-71

    See the detailed result >

    AT3G23990.1

    Model type
    Protein coding
    Short Description
    heat shock protein 60
    Curator Summary
    mitochondrial chaperonin HSP. assist in rapid assembly of the oligomeric protein structures in the mitochondria.
    Computational Description
    heat shock protein 60 (HSP60); FUNCTIONS IN: copper ion binding, ATP binding; INVOLVED IN: response to cadmium ion, response to cyclopentenone, chaperone-mediated protein complex assembly, response to heat, mitochondrion organization; LOCATED IN: cytosol, cytosolic ribosome, mitochondrion, plasma membrane, mitochondrial matrix; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Chaperonin Cpn60/TCP-1 (InterPro:IPR002423), Chaperonin Cpn60, conserved site (InterPro:IPR018370), Chaperonin Cpn60 (InterPro:IPR001844); BEST Arabidopsis thaliana protein match is: heat shock protein 60-2 (TAIR:AT2G33210.1); Has 33706 Blast hits to 33652 proteins in 8680 species: Archae - 676; Bacteria - 21745; Metazoa - 1618; Fungi - 1515; Plants - 790; Viruses - 2; Other Eukaryotes - 7360 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR