K38344

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38344

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38344

Determination of introduced cDNA(s)

  • J033072F23 - Rice Full-length cDNAs - Original: J033072F23

    full reading [+] show sequence

    Nucleotide sequence: J033072F23 - full reading 
    GGTTACGGGG TTTACTTGGT GACGAATCAA TCGAAACCCA ATTTATCAAA 
    TCCATCGCGA ATCCCCAACC CAACCGAATC CACCCAAGAA GAAGAAGAAG 
    AAGAAGAAGG GTTATTGCAT CGATCGCAGC GAGGGGGAAA GGGGTAATCG 
    CGGAGCAGAT CGAAACCCGA ATCCAATCGA TCGAGCCGCC ATGAGCTTCA 
    TCTTCGGCAA GCGGAAGACC CCAGCCGAGT TGCTGCGGGA GAACAAGCGG 
    ATGCTGGATA AATCCATCAG GGAGATCGAG AGGGAGAGGC AGGGCCTGCA 
    GGCTCAGGAG AAGAAGCTCA TCGCCGAGAT CAAGAAGGTG GCCAAGCAAG 
    GACAGATGGG AGCCGTAAAA ATTATGGCAA AGGACCTTAT CCGCACAAGA 
    CATCAGATCA CAAAATTCTA TGCCCTCAAG TCCCAGCTAC AGGGTGTATC 
    TCTTCGAATT CAGACATTGA AATCGACACA AGCTATGGGT GAGGCCATGA 
    AGGGTGTCAC AAAAGCCATG AGACAGATGA ACAGGCAGAT GAATCTACCA 
    GCTCTGCAGA AGATAATGCG GGAGTTTGAG ATACAAAACG AGAAGATGGA 
    GATAGTCAGT AGCACAATGA ATGATGCCAT TGACGATGCT TTGGAGGGCG 
    ATGAGGAGGA GGAAGAAACA GAAGAACTGG TAAACCAGGT CCTTGACGAA 
    ATTGGCATCG ACGTCAACTC AGAGCTTGTC GGGGCTCCTT CAACCGCTGT 
    TGCTGCACCG GTTGGAGCAG GAAAGGTTGC CGCTCAAGCT GAAGCCGCTG 
    GAGGTGGGGA CGGTGGGATA GATGACGACC TACAGGCCCG GCTTGATAAT 
    CTGAGGAAGA TGTGAGCATA TAGGGCTTGG AAGAAATAAC TATACGGTGT 
    CATTGTACAA TCAGCATATA GACATTTTAT GCCATCATTT TTCTTAGATT 
    GTTGGGCACA TAACTGCAGG CTTCGATTTT CTAGCCCCCT TGTATATATA 
    GAAGCTCTTA TTATCC

    Gene models with high sequence identity

    1. AT2G06530.1 [+] show detail - SNF7 family protein
      E-value: 6e-79; Score: 291.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Snf7 1.4e-43
    HMMPanther SNF7-LIKE PROTEIN (BC-2) (PUTATIVE BREAST ADE 1.9e-138
    HMMPanther SNF7-RELATED 1.9e-138
    Coil coiled-coil 0

    See the detailed result >

    AT2G06530.1

    Model type
    Protein coding
    Short Description
    SNF7 family protein
    Computational Description
    VPS2.1; CONTAINS InterPro DOMAIN/s: Snf7 (InterPro:IPR005024); BEST Arabidopsis thaliana protein match is: vacuolar protein sorting-associated protein 2.3 (TAIR:AT1G03950.1); Has 2524 Blast hits to 2516 proteins in 271 species: Archae - 17; Bacteria - 20; Metazoa - 1106; Fungi - 512; Plants - 555; Viruses - 5; Other Eukaryotes - 309 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR