K38347

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38347

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38347

Determination of introduced cDNA(s)

  • J033055B08 - Rice Full-length cDNAs - Original: J033055B08

    full reading [+] show sequence

    Nucleotide sequence: J033055B08 - full reading 
    GAAAATGTCT CTCCGGCCCC TCTGAATCCA TCCTTAAAGA CTAAACCCTC 
    CATAAGCCTC CTCTCTCTCT TTCTTCCAGG AGACAGGTGA CAAGGGGGAT 
    AGATACACAA CGATACTCCG CAGCGCAGGA GGAGGACACA TCCTTGATTT 
    CTGCCATCGG AGGAGCTCCT GCCTCGGAGA TACACGAAGC TGCTACATCT 
    TCTTCCAGCT CAATCGTATC GACGCTTGCA TCTCTTTTGC TCAGAGTGAT 
    CGTCGTTTTT CACAGCTTGC AGGAAAAAAA GGGCAAGAAA GACTGAGAGC 
    AGCAGAAGAG GAAGATGATG ATGACCGAGG TCGCCAATCA CAGCAAAAGG 
    AACCACAATG AAAGCTACTT CACCGGGAAA GCAGCAGTCA CCAGCAGCTC 
    GGAGGAGTTT GGGAGCATGA CATCCAAGAA GCCGAGGAAC ACAAGCCCGA 
    GAGACGCTCC CGTCTCCCCG AAGGAGAAGA AGGATAAGAT TGGTGAGAGA 
    GTGGCTGCAC TGCAGCAGCT AGTGTCACCA TTTGGGAAGA CGGACACTGC 
    TTCTGTTCTT CAGGAGGCCT CAGGGTACAT CAAGTTTCTT CACCAGCAGC 
    TCGAGGTTCT TAGCTCCCCT TACATGCGTG CTCCTCCGGT GCCTGGCGCT 
    GCGCCTGAGG ATCCCGACCA CTACAGCCTG AGGAACCGTG GCCTCTGCCT 
    GGTTCCAGTG GACCAGACGC TGCAGCTGAC GCAGAGCAAC GGCGCCGACC 
    TGTGGGCGCC GGCGAACACG ACCAGGCGCA GGTGAACGGA GGAACCGGCC 
    TGGAGGCTCG GGGGTCTAAG AGGCCTAGAG GAGGAGGGGA GCACTTTTGT 
    CTGGGGGCGG TGTAGAGTTC CAACTTCCAA GTGTCTGACC CGATTCATCA 
    AATCTCCTAA CAAAGCAAAA ACTAATAAGC AAACCGTGTT TCACTCTCGT 
    CGGATCTCTT GCCTGTAATA TAGTAGTAGC TGCAACCCTG CCTGCAGGTC 
    GGTGTGAGAC CGTGAGAGTG TGCTACTGAT GAGTCTGTGT TAGCGCCGGA 
    CATATGTGTG TAATCATCAT ACATAGCGAG GTGATAGTAC TAGACTACCT 
    GATGTGCCCA TATGTGATAT GTAACTATGT GTCTCTTCAG TAACATGATA 
    GTAGCAGCAT GTTGCTGCTA GCAACC

    Gene models with high sequence identity

    1. AT1G05710.5 [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
      E-value: 8e-33; Score: 138.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Helix-loop-helix DNA-binding 2e-10
    ProfileScan Helix-loop-helix DNA-binding domain 7.992

    See the detailed result >

    AT1G05710.5

    Model type
    Protein coding
    Short Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Computational Description
    basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: response to ethylene stimulus, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT2G31730.1).
    Link
    InterPro Scan - TAIR