K38349

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38349

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38349

Determination of introduced cDNA(s)

  • J013036N21 - Rice Full-length cDNAs - Original: J013036N21

    full reading [+] show sequence

    Nucleotide sequence: J013036N21 - full reading 
    GATCGCTCCC CCAAACCGCG CGCGCCCCTC CCTCCTCACG ACCGTCTCCC 
    CTACGCTCCT TTCCCTCCCG CCACGACTCG CGCCGCCACC GCCCCCGCCC 
    CCTCAGTCCC GCCGCCACCG CCACCGCCAC CACTACCACT ACCGACGAAA 
    CCCTAGACTC ACGCAGATCC GTCCCGCGCC GCCACCGCCC CCTCAGTCCC 
    GCCGCCGCTC CTTCCCCCTC CCCACACCAT CGGTGAAACC CTCTCACTGC 
    CGCTGAGGGC TGAGGCCGAT CTGCGGAGGT GGCCTTCCCT GCCCCGCCGG 
    CGCGTGGGGA CTCACTGCCG CCGCGTCTCT AACATCCCCT CTACGCTGCC 
    CGGGTCCTTG CATCGTCGTT GGCTTCCTGG CGGAGAAGTA CAGCATGCCA 
    AATCGAGGTA TTACCCGGAA AAGACCGATA AGATTTCATC AGGTATTTGC 
    TTTTTGCTTC CTGTCTGTGG ATATGTGATG CATACATTCA AGTTGAGAAG 
    ATGTTGTTAT GCACTGACGC CTGTGGCCAG GCTATGAAAA GGTGATGCTT 
    TCTGACGATA CGTTTAATTG CCTAGCGATT TGGATCCCAT ATAGTATAGT 
    ATACCATTAG CTCTTGTTTA TATTATTCAA GTAAATAAGG CTAACTGAAA 
    TTTCCAATAT GAATAGTGAC AGAGGTTCTG ATCTGATTTC ATTTGGTTGG 
    CTCGGTGTAC AGCTGCCGGC TGCAGGGGTC GGTTTAGTGT AGTATCTCGC 
    ATCGATTGTT TTTACTCTGT TAAACAACCT CCAATGGAAC TGTAGTGAAA 
    AATGGCATAT TCCATAGCTA AATTATTTTA TTTAGCTAAA ACTAGCCAGC 
    ACTATACTGA TTGTACATTA ATTCCTAAGG TCACACACTT ATTTGTGGTT 
    AAACTATTGC AGCTCCAACT TTTGGATATA AGGACTACAA TATTTCTGTA 
    TAAAAAATGC AGTACACTTT ATAATCTCAG CCATTGGAAA ACAGATAGTT 
    TGGTTTCTAA TTGAATGTCA TTGTTTTAAC AGCTTACATT TTCTCGTAGC 
    ATCTGCTCCA GGTCACTGCT GCTCAACATC CTATGCAATT AAGATGATGA 
    AAAGAAGCTT GAGGTTTTGA ATCCATGCAA ATTTTTTCTT ACTGTTCTGA 
    TGGTACACCT TATTTCAGGC AGTTAGAAGT CTCGGGCAGT GGTAACCAGG 
    TCTTGCCCAG CCTCACCTCC CAAGCTTTGA GATTCGGGCA GGGGCAGTGG 
    AGGCCGAGGG TGCCGCCGTC CACAACTGAC ATCGTCTCAA GCAGTCAAGC 
    ATCCCCAGCA GCGCAAAGAA AGTGCTGATA AATCTGTTCC CATGACCAAG 
    CCAGAAGCCC TGCAACTTCA CCATCTGCCC GATGATGTCC TGCACCGCAT 
    ACTGTCTCGA TTAACATTCA GAGAGTCCTC ACGGATGGGC CTTCTTTCTC 
    GCAAGTGGCA GAAACTGTGG AGAAGCTGCT GCCCGAAATT GATCTTCACC 
    AGGGCCACCA TGTTCAAGCC TGGGAATAAA ACCATAAGAC GTACAAGGAC 
    CAACTTTGCC AGGAGAGTCA ACAGTCTTTT GCGGCAGCTA TGTGCACCTC 
    CTACCCTGAA TAAGTTTGTT GTTAAGTTTG GGCTGCGCAG GAAACATACC 
    TGCCATGTCA ACAGATGGGT TGGCTTCTGC TCCAAGTTGA GAGCAAGGCA 
    CATCACTTTT GATTTCACTC CTGGAGTGAA GGGTATTTTC AGGGGCTTAG 
    CTGATGAAAA GTACATCTTC CACCTGCATG TTTTCAGTGT CCCTGACCGC 
    TCCCCTGCTC ATATCAAATC CCTTCATCTG AGCTACGTCT GGTTGAACAC 
    AGCAACCACT GGTTTCACTG GCTTTGCAAA CCTCAAGAAG CTCACCCTGC 
    ACAAAGTTTC CTTTTTAAAT GACTTCCAAC ATCTGATGCT GTCGGAGTGC 
    ACTGCTCTTG AGTGGCTGAG CATCAGCTGC TCTTCCTTCA CTGAGCTAAC 
    CTTGTGCAAG CCACTGCGCC GTCTGCGTTA TCTTTCTTTG CACTACTGCT 
    ACATGGAAAA GGTTGAGCTG GAAGCTCCAA ACCTCACATC GGTCGATTTG 
    ACCAATCGGC CAATTCCGTT GGCACTAAGT GAATCTCTGA AGGTGATGGA 
    GGCAAACATT AAACTGCTAC ATAAGAGCGT GCTTTATGGT GATAATCTGG 
    ACTACATCTG CACCGAGCTT CCTGCCGCTC TTCCGCATGT GCAGAAACTC 
    TCCATTACCT CGACACTCTG CATCTACGAT GAGTTGCAAA GTTTTGCCAA 
    AACCTCAGTG AGATTCATCA ATTTGAGGCA TCTGAGCTTG TATTTGCCTC 
    TTTATGGGGA CGGCAGGTCA GTTGGTGGGA TTCTTCGTTT GGCCTACCTC 
    TTGGAGCTCG CTCCAGTTCT AGAGGAACTG GAACTGCACT TTCGCTTCTC 
    TGATTTCGTC ATCAGACAGG CGATCAGAGT GGATATGCTA CCGTATCGGC 
    ATGACAAGCT CAAGAGGGTG GTCATGTCTG GAGCCTGTCA TTGGCAGGGG 
    CTGATCGAGC TAGCACACCA CATTCGTCGT TGTGCTAGTA GACTTGACTG 
    TATGATCATG GATCCGATGG TTAGAATTAA GGGTCTCCCG ACGGTTGATT 
    GGTTGGAGGA AAGAGGCCGC AGGATTGCCA AAGAGCTTCT TAAGAGGCAG 
    GAGTTTCAGG GTGTCCTCAC TGTTTTGTGA GATAAAGCCG CATGAAATAT 
    GGTTTTTGAC GTCAGCTCAC TCCAAGATGC AGTCTTTGCC TTTGACTAAT 
    AATTTATTAC AATAAATTGA TGAAATCCAA TAATTTGCAA TGGATTAGCA 
    CGCGTGATGT CCTCTCTGTG CAGCATGGTC CTGCACTGTA CCTGTACCGT 
    GCACTCGTGC AAGCACAAAC GTTCCACGAC ACGACAATTT GGGGGAATTG 
    AGGGGTACTG CGGCTGTAAA AGTCTTAAAT AGCCTAAGCA TATATTAATT 
    CC

    Gene models with high sequence identity

    1. AT5G02700.1 [+] show detail - F-box/RNI-like superfamily protein
      E-value: 6e-10; Score: 63.90

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D G3DSA:3.80.10.10 1.79999951654677e-07
    ProfileScan F-box domain, cyclin-like 0
    superfamily SSF52047 1.29999924468179e-10
    HMMPfam F-box domain, cyclin-like 0.0078
    superfamily F-box domain, Skp2-like 3.0999994589937e-06
    HMMSmart F-box domain, cyclin-like 4.19999771339581e-08

    See the detailed result >

    AT5G02700.1

    Model type
    Protein coding
    Short Description
    F-box/RNI-like superfamily protein
    Computational Description
    F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT3G28410.1); Has 2196 Blast hits to 2168 proteins in 31 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 2186; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR