K38413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38413

Determination of introduced cDNA(s)

  • J013046E01 - Rice Full-length cDNAs - Original: J013046E01

    full reading [+] show sequence

    Nucleotide sequence: J013046E01 - full reading
    GGTACACACC CACGAAGGTG AGGGGCCCCA TCCAATCCAC ACGAAATCCA 
    TCCCCCCGCC GCGCGCGCCA CCGCCACCGC CACCGCCACC CTCGCCGCGG
    CGCCGCCTCC ACTCCACTCC ACCGCCGCCG CCTATATAAC CCACCTCCAC
    CTCGCTTCCC CGGCCTCGAC TCCACTGCTC CACCACCATG CAGGCGCACG
    CCCACACGCT CGGGCTCCGC ATCTCCCCGC CGCCGCCTGC GCCGCCGCGG
    CGGGAGACGG ACCCGAGGAA GCGGGTGGTG ATCACGGGGA TGGGGCTGGT
    GTCCGTGTTC GGGAACGAGG TGGACGCCTT CTACGAGCGG CTGCTCGCCG
    GGGAGAGCGG GGTCGGCGCC ATCGACCGCT TCGACGCCGG CGGCTTCCCC
    ACGAGGTTCG CCGGCCAGAT ACGCGGGTTC TCCTCGGAGG GGTACATCGA
    CGGCAAGAAC GACCGGAGGC TCGACGACTG CCTCCGCTAC TGCATCGTCA
    GCGGCAAGAA GGCGCTCGAG AACGCCGGCC TCGGCAAGGG CTCCGATGGC
    CACACCAAGC TTGACAAAGT CCGGGCTGGT GTTCTTGTGG GAACTGGCAT
    GGGTGGCCTC ACTGTGTTTT CCGATGGTGT TCAAAACCTT ATTGAGAAGG
    GATACAAGAA AATTTCGCCT TTCTTTATCC CATACGCTAT AACTAACATG
    GGCTCGGCAT TGCTAGCAAT GGATGCTGGT TTTATGGGTC CAAACTACTC
    AATTTCAACA GCTTGTGCGA CCTCCAACTA CTGCTTCTAT GCTGCTGCCA
    ACCATATACG TCGGGGTGAG GCTGATGTTA TCGTTGCTGG TGGTACTGAA
    GCTGCAATTA TTCCAATTGG CCTTGGAGGT TTTGTGGCCT GTAGAGCACT
    ATCGCAGAGG AACGATGACC CAGAAACTGC ATCTAGGCCA TGGGACAAAG
    AGCGAGATGG TTTTGTTATG GGCGAAGGTG CTGGTGTACT GGTCATGGAG
    AGCCTGGAGC ATGCGATGAA GCGGGATGCA CCAATAATTG CTGAATATTT
    GGGAGGTGCA GTAAACTGTG ATGCTTACCA TATGACTGAT CCTAGGTCAG
    ATGGACTGGG TGTATCGTCC TGTATTACTC AGAGCCTTGA AGATGCAGGT
    GTTGCGCCAG AGGAGGTAAA TTACATCAAT GCACATGCAA CTTCAACTCT
    TGCTGGTGAC TTGGCTGAAG TAAGAGCCAT TAAGCAAGTC TTCAAGAATC
    CATCTGATAT TAAAATCAAT TCAACGAAGT CTATGATAGG CCATTGCCTA
    GGTGCCGCTG GTGGGTTAGA AGCTATTGCC GTTGTCAAAG CCATAACTAC
    TGGATGGGTG CATCCTACTA TTAACCAATT TAACCCCGAG CCTGAAGTTG
    ATTTTGATAC AGTAGCCAAC GAGAAGCAGC AGCACGAAGT GAATGTTGCT
    ATCTCTAATT CATTTGGATT TGGAGGTCAC AATTCAGTGG TAGTATTTGC
    GCCATTCAAG CCATGATTCC AATTTTTTGC TTCAGAAAAT ATATAGCCTG
    CAGCATTTTC TGGCAGTTGG TAATTAGTGA GGAATTGCTA GATGTAGCAT
    ATTTGATTTT ACCGGCCTCC ATCTTCAAGG GAGAAATTTT GATTTGAGTG
    TAACCGGATT ATGATCATTA GATGCCAATT CTTTTCGGGT TCCCGTTGTG
    TATGTTATGG TGTGACAGAT CTGAAATAGT GTAAAGACAT CAGTGATCC

    Gene models with high sequence identity

    1. AT5G46290.1 [+] show detail - 3-ketoacyl-acyl carrier protein synthase I
      E-value: 0; Score: 676.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Beta-ketoacyl synthase, N-terminal 1.4e-55
    HMMPfam Beta-ketoacyl synthase, C-terminal 8.2e-34
    Gene3D Thiolase-like, subgroup 1.3e-69
    Gene3D Thiolase-like, subgroup 3.9e-50
    HMMSmart Polyketide synthase, beta-ketoacyl synthase region 9.5e-15
    superfamily Thiolase-like 1.8e-68
    superfamily Thiolase-like 3.3e-68
    HMMTigr 3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3e-212
    HMMPanther 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3.2e-97
    HMMPanther Beta-ketoacyl synthase 3.2e-97
    PatternScan Beta-ketoacyl synthase, active site 0

    See the detailed result >

    AT5G46290.1

    Model type
    Protein coding
    Short Description
    3-ketoacyl-acyl carrier protein synthase I
    Curator Summary
    3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,
    Computational Description
    3-ketoacyl-acyl carrier protein synthase I (KAS I); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Polyketide synthase, beta-ketoacyl synthase region (InterPro:IPR020841), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: fatty acid biosynthesis 1 (TAIR:AT1G74960.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR