K38413

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38413

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • desaturated green (PATO:0001272)
    (Stem::Color::pale)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38413

Determination of introduced cDNA(s)

  • J013046E01 - Rice Full-length cDNAs - Original: J013046E01

    full reading [+] show sequence

    Nucleotide sequence: J013046E01 - full reading 
    GGTACACACC CACGAAGGTG AGGGGCCCCA TCCAATCCAC ACGAAATCCA 
    TCCCCCCGCC GCGCGCGCCA CCGCCACCGC CACCGCCACC CTCGCCGCGG 
    CGCCGCCTCC ACTCCACTCC ACCGCCGCCG CCTATATAAC CCACCTCCAC 
    CTCGCTTCCC CGGCCTCGAC TCCACTGCTC CACCACCATG CAGGCGCACG 
    CCCACACGCT CGGGCTCCGC ATCTCCCCGC CGCCGCCTGC GCCGCCGCGG 
    CGGGAGACGG ACCCGAGGAA GCGGGTGGTG ATCACGGGGA TGGGGCTGGT 
    GTCCGTGTTC GGGAACGAGG TGGACGCCTT CTACGAGCGG CTGCTCGCCG 
    GGGAGAGCGG GGTCGGCGCC ATCGACCGCT TCGACGCCGG CGGCTTCCCC 
    ACGAGGTTCG CCGGCCAGAT ACGCGGGTTC TCCTCGGAGG GGTACATCGA 
    CGGCAAGAAC GACCGGAGGC TCGACGACTG CCTCCGCTAC TGCATCGTCA 
    GCGGCAAGAA GGCGCTCGAG AACGCCGGCC TCGGCAAGGG CTCCGATGGC 
    CACACCAAGC TTGACAAAGT CCGGGCTGGT GTTCTTGTGG GAACTGGCAT 
    GGGTGGCCTC ACTGTGTTTT CCGATGGTGT TCAAAACCTT ATTGAGAAGG 
    GATACAAGAA AATTTCGCCT TTCTTTATCC CATACGCTAT AACTAACATG 
    GGCTCGGCAT TGCTAGCAAT GGATGCTGGT TTTATGGGTC CAAACTACTC 
    AATTTCAACA GCTTGTGCGA CCTCCAACTA CTGCTTCTAT GCTGCTGCCA 
    ACCATATACG TCGGGGTGAG GCTGATGTTA TCGTTGCTGG TGGTACTGAA 
    GCTGCAATTA TTCCAATTGG CCTTGGAGGT TTTGTGGCCT GTAGAGCACT 
    ATCGCAGAGG AACGATGACC CAGAAACTGC ATCTAGGCCA TGGGACAAAG 
    AGCGAGATGG TTTTGTTATG GGCGAAGGTG CTGGTGTACT GGTCATGGAG 
    AGCCTGGAGC ATGCGATGAA GCGGGATGCA CCAATAATTG CTGAATATTT 
    GGGAGGTGCA GTAAACTGTG ATGCTTACCA TATGACTGAT CCTAGGTCAG 
    ATGGACTGGG TGTATCGTCC TGTATTACTC AGAGCCTTGA AGATGCAGGT 
    GTTGCGCCAG AGGAGGTAAA TTACATCAAT GCACATGCAA CTTCAACTCT 
    TGCTGGTGAC TTGGCTGAAG TAAGAGCCAT TAAGCAAGTC TTCAAGAATC 
    CATCTGATAT TAAAATCAAT TCAACGAAGT CTATGATAGG CCATTGCCTA 
    GGTGCCGCTG GTGGGTTAGA AGCTATTGCC GTTGTCAAAG CCATAACTAC 
    TGGATGGGTG CATCCTACTA TTAACCAATT TAACCCCGAG CCTGAAGTTG 
    ATTTTGATAC AGTAGCCAAC GAGAAGCAGC AGCACGAAGT GAATGTTGCT 
    ATCTCTAATT CATTTGGATT TGGAGGTCAC AATTCAGTGG TAGTATTTGC 
    GCCATTCAAG CCATGATTCC AATTTTTTGC TTCAGAAAAT ATATAGCCTG 
    CAGCATTTTC TGGCAGTTGG TAATTAGTGA GGAATTGCTA GATGTAGCAT 
    ATTTGATTTT ACCGGCCTCC ATCTTCAAGG GAGAAATTTT GATTTGAGTG 
    TAACCGGATT ATGATCATTA GATGCCAATT CTTTTCGGGT TCCCGTTGTG 
    TATGTTATGG TGTGACAGAT CTGAAATAGT GTAAAGACAT CAGTGATCC

    Gene models with high sequence identity

    1. AT5G46290.1 [+] show detail - 3-ketoacyl-acyl carrier protein synthase I
      E-value: 0; Score: 676.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Beta-ketoacyl synthase, N-terminal 1.4e-55
    HMMPfam Beta-ketoacyl synthase, C-terminal 8.2e-34
    Gene3D Thiolase-like, subgroup 1.3e-69
    Gene3D Thiolase-like, subgroup 3.9e-50
    HMMSmart Polyketide synthase, beta-ketoacyl synthase region 9.5e-15
    superfamily Thiolase-like 1.8e-68
    superfamily Thiolase-like 3.3e-68
    HMMTigr 3-oxoacyl-[acyl-carrier-protein] synthase 2 2.3e-212
    HMMPanther 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 3.2e-97
    HMMPanther Beta-ketoacyl synthase 3.2e-97
    PatternScan Beta-ketoacyl synthase, active site 0

    See the detailed result >

    AT5G46290.1

    Model type
    Protein coding
    Short Description
    3-ketoacyl-acyl carrier protein synthase I
    Curator Summary
    3-ketoacyl-acyl carrier protein synthase I (KAS I) mRNA,
    Computational Description
    3-ketoacyl-acyl carrier protein synthase I (KAS I); FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, fatty acid synthase activity, catalytic activity; INVOLVED IN: biosynthetic process, metabolic process, fatty acid biosynthetic process; LOCATED IN: chloroplast, chloroplast stroma, membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta-ketoacyl synthase (InterPro:IPR000794), Polyketide synthase, beta-ketoacyl synthase region (InterPro:IPR020841), Thiolase-like (InterPro:IPR016039), Beta-ketoacyl synthase, C-terminal (InterPro:IPR014031), 3-oxoacyl-[acyl-carrier-protein] synthase 2 (InterPro:IPR017568), Beta-ketoacyl synthase, N-terminal (InterPro:IPR014030), Thiolase-like, subgroup (InterPro:IPR016038), Beta-ketoacyl synthase, active site (InterPro:IPR018201); BEST Arabidopsis thaliana protein match is: fatty acid biosynthesis 1 (TAIR:AT1G74960.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR