K38433

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38433

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38433

Determination of introduced cDNA(s)

  • J023020K18 - Rice Full-length cDNAs - Original: J023020K18

    full reading [+] show sequence

    Nucleotide sequence: J023020K18 - full reading 
    GACATCCGTC TCCCACCTGA CTCGTTCTAA TCGGCGAAGA GAAACCCACA 
    CAAGAGGAAG ATGGCGGCGC CGGCGACCGG CGGCGGGATC TCCGCCGACG 
    TCCCCATCCT CCACTCGGAG AACCTCACCA GCAACGTCAA ATCCATCTAC 
    TACAGGTTCC GCTCGTTCTC TTCCCCCCCC CCCCCCCCCC CCCAACCAAA 
    GTTTAGAATT CGATCTGATC TGATAAGTAG GGTCATGCTT ATGTCTGTTC 
    GATTGGATCT GGGATTTATG CGACGACATG GTTTGATCTG CTCAGATTAG 
    CCCTAATTCT TTCGATTCAA TCCGGAACCG TGCGACCTGG TAGTTTCACT 
    GTAGGCATGC TTCCGCTCTT CTTGCGGCAA TTTCGAAATC TCGGGGTGCA 
    GTTTAGGATC AAAATCTAAG TACTATGAAT AATAAGAAAA GGATCAAGTA 
    ATTCTGTGGG CCAGTTCATA CTGCCAGAAA CTGTGGGTCA AATTGCACAC 
    TTACACTAGG ATCTACTAAA ATTAGAGTAA TCAGGCTTCA TGAATCAACT 
    GAAAGTTTTC AATGTTTACA TGCTTTTCTA CTTCATGCTC AGATAGATGC 
    TAGATACCTC CCATTAACTA TTAACTCTTT TCGTAACCCT TTCAGCAATT 
    CTAGTCATTG ATGATTATTT TTGACTGCTT CACTTTTATA CCAAGATGGC 
    AAGGTGATAT GTCTTAACCG TGAGGATTGA TTTTGCGTTG CAGTCGGACA 
    TTCTTGTCAA TTATCAGTGG AGTTGTTGCC GGAATCTGGG GATTCACAGG 
    CTTGATGGGA TTCGTGTTCT ACCTTCTTGT AATGATGGTG GCATCCCTTG 
    GGCTTTTGCT GAAGGCCAAA TTTTCAATTC ATACATACTT TGACAGCTGG 
    AACAGGATTT TGATTGAAGG AGTTTTTGGT GGCCTTATGG TAAGCCATAC 
    TGGAGCTGTA ACATTGTGAT GCACACCTTT ATTTCCATAA AACTTGAATG 
    TCCAGATCAT TCAACATGAT TTACATGAAC TTGTATCTTT CATGTTTAAT 
    CTATATTCTA TGTTATTATG AAGCATGGGA TGATGGGAAG ATTGATCATT 
    TTAGAAAGTT GATGAATGTG GAACATCCCT TAACAATCTG TTCGGGTTTG 
    GCATTTTAAC CAAATTGTTA GAAACCTCCT AGTTAGGAAT AGTGTGACAT 
    TATCATGGAT CTTCCTAGCT GTTAAAAGGT GGCCTGGTTT GGTGGGAGAA 
    TACAGATTTT TGATGGAAGG AGTATAAAAC ATTGGGAGCT TCATACCCTA 
    ACTAATGATT CACATCTCAA TTGTTACTGT TGACTGTTGG TAAATGTTCT 
    CAAGTTATAC AACCACATTT TCTTAACTAT ATGTTTGGTG TTGCTAGTAT 
    TCTAATATCA ATATAGGATT CTATTGCCTC AATGTATAGT TCATCACTAG 
    ATTATTTCCT CAAATTTCTT CATGATAATG AGCTTTATCC TGTTTTGGAT 
    GGTGGCCTAA CATTATTTCC TTGCTTTTTT TGCAGTCTTT TGTGCTGTTT 
    TGGACGTATC CTTGATGCTG TAAATATTAT TGCTATTTTC AATTTTCCAT 
    ATATACACAA ACCATCTAGT ATTTCTTATT CAGTATAGGT GTCAGGCAAG 
    GTCTGATTCG ATTACTAGTA TAATGGCTCA CCACCATAGA ACCATACTAA 
    AGCCACATAA CTGAGAGTAT GTAAATCATT ATTATGTGAG GCCATAGCAT 
    GAATTTGAGG TAGACCATTG TGGTTATACA TTTGAAGATG CCATATAAAT 
    TATATAATGC ATGCCAATTT TTATGTTTGA GTTTGTCCTT AACAATGAAC 
    AGATTTGCGT ATGATATTGT GCACATCTTC TGATGCACGG CATAAAGAAC 
    TCAACTCCGA AGACTTGAAG GGAGCTGTGG GGTTTCTCCT TGAACTGAAT 
    TAACGTGTAA CCGCACCAAC CCTGGAGGAC TACATTCGTT GGACTGCTGT 
    CCTGTTTTGT TCCTTTTTTT TCCACTCCAC ATGTATCAGT TATAGCTCTG 
    TACTTTAGAA AGATGCAAGC TTATTAAGTT TAATTT

    Gene models with high sequence identity

    1. AT5G49540.1 [+] show detail - Rab5-interacting family protein
      E-value: 6e-20; Score: 96.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rab5ip 0.00000000000650000000000001
    HMMPanther Protein of unknown function DUF786 3.19999899046355e-21

    See the detailed result >

    AT5G49540.1

    Model type
    Protein coding
    Short Description
    Rab5-interacting family protein
    Computational Description
    Rab5-interacting family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF786 (InterPro:IPR008504); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR