K38433

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38433

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38433

Determination of introduced cDNA(s)

  • J023020K18 - Rice Full-length cDNAs - Original: J023020K18

    full reading [+] show sequence

    Nucleotide sequence: J023020K18 - full reading
    GACATCCGTC TCCCACCTGA CTCGTTCTAA TCGGCGAAGA GAAACCCACA 
    CAAGAGGAAG ATGGCGGCGC CGGCGACCGG CGGCGGGATC TCCGCCGACG
    TCCCCATCCT CCACTCGGAG AACCTCACCA GCAACGTCAA ATCCATCTAC
    TACAGGTTCC GCTCGTTCTC TTCCCCCCCC CCCCCCCCCC CCCAACCAAA
    GTTTAGAATT CGATCTGATC TGATAAGTAG GGTCATGCTT ATGTCTGTTC
    GATTGGATCT GGGATTTATG CGACGACATG GTTTGATCTG CTCAGATTAG
    CCCTAATTCT TTCGATTCAA TCCGGAACCG TGCGACCTGG TAGTTTCACT
    GTAGGCATGC TTCCGCTCTT CTTGCGGCAA TTTCGAAATC TCGGGGTGCA
    GTTTAGGATC AAAATCTAAG TACTATGAAT AATAAGAAAA GGATCAAGTA
    ATTCTGTGGG CCAGTTCATA CTGCCAGAAA CTGTGGGTCA AATTGCACAC
    TTACACTAGG ATCTACTAAA ATTAGAGTAA TCAGGCTTCA TGAATCAACT
    GAAAGTTTTC AATGTTTACA TGCTTTTCTA CTTCATGCTC AGATAGATGC
    TAGATACCTC CCATTAACTA TTAACTCTTT TCGTAACCCT TTCAGCAATT
    CTAGTCATTG ATGATTATTT TTGACTGCTT CACTTTTATA CCAAGATGGC
    AAGGTGATAT GTCTTAACCG TGAGGATTGA TTTTGCGTTG CAGTCGGACA
    TTCTTGTCAA TTATCAGTGG AGTTGTTGCC GGAATCTGGG GATTCACAGG
    CTTGATGGGA TTCGTGTTCT ACCTTCTTGT AATGATGGTG GCATCCCTTG
    GGCTTTTGCT GAAGGCCAAA TTTTCAATTC ATACATACTT TGACAGCTGG
    AACAGGATTT TGATTGAAGG AGTTTTTGGT GGCCTTATGG TAAGCCATAC
    TGGAGCTGTA ACATTGTGAT GCACACCTTT ATTTCCATAA AACTTGAATG
    TCCAGATCAT TCAACATGAT TTACATGAAC TTGTATCTTT CATGTTTAAT
    CTATATTCTA TGTTATTATG AAGCATGGGA TGATGGGAAG ATTGATCATT
    TTAGAAAGTT GATGAATGTG GAACATCCCT TAACAATCTG TTCGGGTTTG
    GCATTTTAAC CAAATTGTTA GAAACCTCCT AGTTAGGAAT AGTGTGACAT
    TATCATGGAT CTTCCTAGCT GTTAAAAGGT GGCCTGGTTT GGTGGGAGAA
    TACAGATTTT TGATGGAAGG AGTATAAAAC ATTGGGAGCT TCATACCCTA
    ACTAATGATT CACATCTCAA TTGTTACTGT TGACTGTTGG TAAATGTTCT
    CAAGTTATAC AACCACATTT TCTTAACTAT ATGTTTGGTG TTGCTAGTAT
    TCTAATATCA ATATAGGATT CTATTGCCTC AATGTATAGT TCATCACTAG
    ATTATTTCCT CAAATTTCTT CATGATAATG AGCTTTATCC TGTTTTGGAT
    GGTGGCCTAA CATTATTTCC TTGCTTTTTT TGCAGTCTTT TGTGCTGTTT
    TGGACGTATC CTTGATGCTG TAAATATTAT TGCTATTTTC AATTTTCCAT
    ATATACACAA ACCATCTAGT ATTTCTTATT CAGTATAGGT GTCAGGCAAG
    GTCTGATTCG ATTACTAGTA TAATGGCTCA CCACCATAGA ACCATACTAA
    AGCCACATAA CTGAGAGTAT GTAAATCATT ATTATGTGAG GCCATAGCAT
    GAATTTGAGG TAGACCATTG TGGTTATACA TTTGAAGATG CCATATAAAT
    TATATAATGC ATGCCAATTT TTATGTTTGA GTTTGTCCTT AACAATGAAC
    AGATTTGCGT ATGATATTGT GCACATCTTC TGATGCACGG CATAAAGAAC
    TCAACTCCGA AGACTTGAAG GGAGCTGTGG GGTTTCTCCT TGAACTGAAT
    TAACGTGTAA CCGCACCAAC CCTGGAGGAC TACATTCGTT GGACTGCTGT
    CCTGTTTTGT TCCTTTTTTT TCCACTCCAC ATGTATCAGT TATAGCTCTG
    TACTTTAGAA AGATGCAAGC TTATTAAGTT TAATTT

    Gene models with high sequence identity

    1. AT5G49540.1 [+] show detail - Rab5-interacting family protein
      E-value: 6e-20; Score: 96.70

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Rab5ip 6.50000000000001e-12
    HMMPanther Protein of unknown function DUF786 3.19999899046355e-21

    See the detailed result >

    AT5G49540.1

    Model type
    Protein coding
    Short Description
    Rab5-interacting family protein
    Computational Description
    Rab5-interacting family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF786 (InterPro:IPR008504); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR