K38449

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38449

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38449

Determination of introduced cDNA(s)

  • J013094L23 - Rice Full-length cDNAs - Original: J013094L23

    full reading [+] show sequence

    Nucleotide sequence: J013094L23 - full reading 
    GCTATCCTCC ACCTCGGCTT ATCTCCTCCC CCCTCCCCAC CACCACCACC 
    ACCACCATGG CCACAGCCGC TTCCCTCTCC GCCACCGCCT CCTCCCTCCT 
    CGCCCCCGCC CCCGCCACCA CCGGCGCCGC GGCGGCGCAG TGCTGCTCCT 
    CCTCGTCCAC CGCGCTGTTC CCCACCCCCG TCCCGTCGCT GCGCGCCTAC 
    TACCCGCGCC TGCTCCTCGC GTTCCGCCGC CCCGCCGTCG CCGCCGTCGC 
    AGACCCGCAG GGCGCCGTGC TCGAGGAGGA GCAGGGGGAG CAGCAGGACG 
    AGGGGCAGGA GCAGTACGAC GACGACGACT ACGACGACGG GTACGAGGGC 
    GGACGCGGCC CCGCGTTCAC GCCCCCCACC CGCCCGCGCA CCGGCAAGGC 
    CGCCCTTCCG CTCAAGCGCG ACCGCACGAG GTCGAAGCGA TTCCTGGAGA 
    TACAGAAGCT GAGGGAGAGC AAGAAGGAGC ACGACGTGCC CACGGCCATC 
    TCGCTGGTGA AGCAGATGGC CAGCGCCCGA TTCGTCGAGT CCGCTGAGGC 
    GCACTTCCGC ATGAACCTCG ACCCCAAGTA CAACGACCAG CAGCTCCGCG 
    CCACGGTTAA TTTGCCCAAG GGGACGGGCC AGTCGGTGAA GATTGCGGTC 
    CTCACACAAG GTGAGAAGAT AGATCAAGCA AGAGCTGCAG GAGCTGATAT 
    TGTCGGTGGA GATGACCTGA TTGACCAAAT AAAAGGAGGA TTTATGGAAT 
    TTGACAAGCT GATTGCATCA CCTGATATGA TGCCTAAGGT CGCCGGATTG 
    GGAAAGATTC TAGGACCGAG AGGACTTATG CCTAACCCCA AAGCTGGGAC 
    TGTTTCTCCA AACATAACTC AGGCTATCGA AGAGTTCAAG AAAGGTAAAG 
    TTGAATACAG AGTTGACAAG ACAGGGATTG TTCACATTCC CTTTGGGAAG 
    GTTGATTTTC CTGAAGAAGA CCTTATTGCA AACTTCATGG CTGTTGTTCG 
    CTCTGTCGAA AGGAACAAAC CATCTGGTGC AAAGGGGATA TACTGGAAAA 
    CGGCATACTT ATGCTCATCA ATGGGGCCTT CAATCAAGTT AAACATCAAA 
    GAAATGCTTG ACTATGGCTC AGAATCATCA GACTAAATGC CACGAAAAGC 
    ACCAGTTAAG AAATCTGGTG TTTGCTACCA CCTTCACAAA ATTAACCATC 
    CACCCTTAGC GATAAATGAA CCGGGAAACA TGGTGGGGGA AGGCAAGGGA 
    GGTGCTTAGG TACAGTTTTT TTTTCAGTCT CACCTGCATC CATCCAGCAG 
    TTACACGATG CCCAAGTCGA CGAAGGGGTG ATATTGTTGG CCATTTGTAC 
    TTACGAGCAA ATTATTTACG GACTTATAGA TGTGTTTTCT GAGATGTTTG 
    TTGTAATGAT CAATATTTTG TCCATAGTC

    Gene models with high sequence identity

    1. AT3G63490.1 [+] show detail - Ribosomal protein L1p/L10e family
      E-value: 5e-115; Score: 411.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Ribosomal protein L1 0
    superfamily Ribosomal protein L1 1.1e-75
    HMMTigr Ribosomal protein L1, bacterial-type 1.1e-132
    HMMPfam Ribosomal protein L1 1.1e-76
    Gene3D Ribosomal protein L1, 2-layer alpha/beta-sandwich 1.2e-41
    HMMPanther 50S RIBOSOMAL PROTEIN L1P 2e-92
    HMMPanther RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 2e-92

    See the detailed result >

    AT3G63490.1

    Model type
    Protein coding
    Short Description
    Ribosomal protein L1p/L10e family
    Computational Description
    Ribosomal protein L1p/L10e family; FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, RNA processing; LOCATED IN: in 6 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L1 (InterPro:IPR002143), Ribosomal protein L1, bacterial-type (InterPro:IPR005878), Ribosomal protein L1, 2-layer alpha/beta-sandwich (InterPro:IPR016094); BEST Arabidopsis thaliana protein match is: Ribosomal protein L1p/L10e family (TAIR:AT2G42710.1); Has 9168 Blast hits to 9162 proteins in 2816 species: Archae - 276; Bacteria - 5341; Metazoa - 152; Fungi - 277; Plants - 105; Viruses - 0; Other Eukaryotes - 3017 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR