K38508

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38508

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38508

Determination of introduced cDNA(s)

  • J023148C06 - Rice Full-length cDNAs - Original: J023148C06

    full reading [+] show sequence

    Nucleotide sequence: J023148C06 - full reading 
    GTGGAGCCGA GATGGGAAAG GAAGCAAGCG CGATGGTTGC GAGGAGAAGC 
    ACCAGCCGCC GTGATTGGAG GAGGTGGTGG TGGTGGCTGC TGCCTCTCGC 
    CTGCTGCTTC GTTTGTTGGG TTGCCTCGTC GGCGGCGACG GTGGCGCCGG 
    CGGCCGGTGT CGCCGTGACG AGCCTTCCTG GATTCGACGG CCCACTGCCA 
    TTCTCCCTCG AGACCGGATA CGTGGAGGTG AACGAGAGTA CGGGCGTGCG 
    TCTCTTCTAC TACTTTGTCC AGTCAGAGAA GGATCCTGAT GTAGACCCAC 
    TTTTATTGTG GCTATCAGGT GGGCCTGGCT GTTCTAGTCT CTCTGGCCTA 
    ACCCACGAGA TAGGACCATT CCAATTCGCC GCAAAACGGT ATTACAGTGG 
    AGGATTGCCG AAAATTATCT ATCAACCAGA GACTTGGACT AAGGTGAGCA 
    ACATAATTTT TGTGGATTCT CCCGTAGGGG CAGGATTCTC ATACGCGGCA 
    ACACAGGAAG GCTCCAAGAC TAGCGATACC AAGACAGTGA AACAGCTTGT 
    TATTTTCCTC AGAAAGGTAA CTCGGTGCTG ACCAATGCCC CAGAATTTCA 
    GATTTTTACA CCACCTATCT TGTATGGAAT TGGTTTAATA TATTTTTTGT 
    TTGCCTTATG GTTTTCTTCG AGAACATCCG CAGGCTTCGA ATGCCATTTC 
    AGTAACATCC ACCATCCGTT ACAAAATATT ATGTTTTTTT AGGTTGCTTA 
    GAAAATACTA CAGTTAGGAC GAAAGATTTC TTTTCTGTCA CTTGAGTTAT 
    CAATTTTTAA AGTTTAAATA TATATCTTAG ATTTCCTTTC CAAACATCTG 
    ATTGGTGATA TAAAATTGGA ATCCTAGAGA TACTTATATT TTGAAATGGA 
    GAGAGAATGA GAAAGTGCTT GTACGGCACG TAATTAAGTT GCACTGGTTA 
    TTACTACTGA AATTGTAAAT ATTATATTTT AAATAATATG TTGAATAAGT 
    TGGCAATATT TCGGTGAACG AACACTTGGA CTTTTTTTAT TTCTGAAGAA 
    GGAACAATTT ACTTTGTTAT TATGTTCCAA AAATCAAAAT TATTAATTAG 
    AAATACTTAT ATAGAATGGA TCCTTATGTT TCTGCTGTTA CATTGCTGAT 
    GTTGGGTCCG CAGCATTTGC TATCATGTAA TATAGAAATT TAGAATTAGT 
    GAGTATCAGT AAACCCAGTT TAGATATCAT TTTAAATTTA ATAATACCAA 
    AACATATAAA TAAGAGATAT CAAGTTGTAC TTTGATTGTG CCTCGATTAT 
    CTTTTACATG GTTTAATAAT TCTAAAGCTC ATAATTAATA AGTGTATTGA 
    ACTGCATTTT GGGTTGGGGA TCAAAATAAT AGCCATTAAG GGTTAAAAAA 
    TTCCAAAATT GGTAATTAAT AAACAATTGA GTGGTACTGG ATAAAGAGTT 
    TCAATGGTAG TTTTTCAAGG TTTTAAATCA TTCCGGAAAA TTCGATATAA 
    GTGAGTATTC ACATATGTAT CnCAGTTGGG AGCCCCAAAT AATAAAATTC 
    AAnGATTTAA TAGTTCCACG GGGAAATAAT TAATCACTAA TTTGTTTTCG 
    CCAAAGGTAT ATTTATTTAA AAAAAAATTC TGATTCCGGT CTATAGTAAA 
    TAATACAATC CAACTACCTA AGGGCCTTAA TTCCAAATTA CCTACTAGTG 
    GAATATAATA TAAAAGATGT ATTCGGGTGT TGGTTATTCC CTCGTGATTA 
    TTCAATATGA TGCCATTTGA AATGAAATAT GTGTTAACTT AGCGATATAT 
    AAAATATAAT TAAGAAAAGA TTCACTTACT GCCCGTTTAA AGATGCTGCC 
    TGGACAGGTG GAAAATATTT AAGTGCATGC TGAAGATTGA GCGAGGTTGA 
    TTTGTAATCC CTCCGTCCAC TGACTAATGC GCGCTCTTCA AAACTAGTAT 
    TTGACTTTAA ATTTATTATA TATTATAAAC AAAAGTTGTA AATCCAAAGG 
    TTAATCTAAT CATATTATTT TCATAAAAAA ATTTAATTCC TAATAAAATA 
    ATTATTGGTC CAACATTTAG GTTGAGTTCG TTCATTTACT TTCCCACTCA 
    TTTCTCTTTT TCCATGTGCA CACTTTTCAA ACTACTAAAC AGTGTATTTT 
    TTGCAAAAAA AAAATTATAT AGTAAAGTTT CTTTGAAAAT CATATTAATC 
    TATTTTTTAA AAAATGATAA TACTTAATTA ATAATGTGCT AATAAGTAAC 
    TATGTTTTGC GTAAGTGAAA GGTTAGTTTC AACCTCAATA AAAGAACTCA 
    GTCTTAAAAT TTGAATCTTG TGAACGCCAT ATTCAGTGGG ACAAAGAGAG 
    TACTATTATG ATTTTGTAAG CTTCTAATTA ATGAAACGGG AAGTTTAGTC 
    ATTCGTGCTT CTTCGGTAAA TAGG

    Gene models with high sequence identity

    1. AT1G33540.1 [+] show detail - serine carboxypeptidase-like 18
      E-value: 2e-26; Score: 118.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily alpha/beta-Hydrolases 3.9e-46
    HMMPanther SERINE CARBOXYPEPTIDASE I (PLANTS) 1.3e-68
    HMMPanther Peptidase S10, serine carboxypeptidase 1.3e-68
    Gene3D no description 1.3e-42
    HMMPfam Peptidase S10, serine carboxypeptidase 1.2e-45

    See the detailed result >

    AT1G33540.1

    Model type
    Protein coding
    Short Description
    serine carboxypeptidase-like 18
    Computational Description
    serine carboxypeptidase-like 18 (scpl18); FUNCTIONS IN: serine-type carboxypeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Peptidase S10, serine carboxypeptidase (InterPro:IPR001563); BEST Arabidopsis thaliana protein match is: serine carboxypeptidase-like 7 (TAIR:AT3G10450.1); Has 3653 Blast hits to 3603 proteins in 397 species: Archae - 0; Bacteria - 261; Metazoa - 616; Fungi - 829; Plants - 1537; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR