K38514

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38514

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38514

Determination of introduced cDNA(s)

  • J023140I22 - Rice Full-length cDNAs - Original: J023140I22

    full reading [+] show sequence

    Nucleotide sequence: J023140I22 - full reading 
    GTCCTGCGCC TCACCTTGTC TAGTTAGCAA TGGCGGCTGA TCACCTTGTC 
    GTGGCCATGC TTCTCCTGCT GGCTTTGTCG CCGCCGGCCG TTGCTGACGA 
    CACGGCGGTG CTCGGCCGGA AAGGCGGCGT CGTGGAAGGG CAGGCGGCGG 
    GGCCGGGGAG GTACGCCGTG ATATTGGACG CCGGCAGCAC CGGCACACGG 
    GTGCACGTCT TCAGGTTCGA CAACAAGCTG GACCTCCTCA AGGTCGGCGA 
    CAACATCGAG CTCTTCGCTA AGGTGGATCC TGGGCTGAGC TCCTACGCTG 
    GACGTCCTCA GGATGCCGCA AACTCCATAT TGCCTCTGCT TGACAAGGCC 
    AACACCGTTG TTCCTGCCAG ACTTATGAAC AAAACTCCCC TTAAACTTGG 
    GGCAACTGCC GGACTCAGAC TTATTGGAGA TGAAAAGGCG AACCAGATTC 
    TTGAAGCGGT TAGGGATGTA GTCCACACCA AGAGCAAATA TCAGTATAAC 
    CCGAACTGGA TCAACGTTCT TGAGGGATCC CAGGAAGGGT CATACATATG 
    GGTTGCTCTG AATTATCTCC TGGATAAATT GGGAGGAGAC TACTCTAAAA 
    CCGTAGGGGT GGTTGATCTT GGAGGTGGAT CCGTACAAAT GGCATACGCC 
    ATCTCATCAA ACACCGCTGC TACCGCTCCA AAGGTGCCCG AAGGAAAAGA 
    TTCCTATGTT GTGAAGGAGT ATCTCAAGGG AAAAGATTAT AACATTTATG 
    TGCACAGCTA TTTGCACTAT GGCGGTTTTG CTTCTCGCGC GCACATCCTA 
    GAGAGAAAGG ATGGACCATT TAGCAACTGC ATGCTGCGCG GATTCAGTGG 
    TAACTTCACC TACAACGGCA AGCAGTACGA CGCAACGGCC GCACCACAAG 
    GTGCAGACTA CCACAAGTGC AGAGAAGAAG TAGTGAAGTT ACTGAAGGTG 
    AATGCGCCCT GCGAAACCAA GAACTGCAGC TTCAATGGCG TCTGGAACGG 
    TGGTGGCGGA GCAGGGCAGG ATGACCTCTA CGTTGCGTCC GCCTTCTACT 
    ACATAGCCTC CCATGTTGGG TTCATCAACA GCGATGCACC CAGTGCGAAG 
    TCAACCCCTG CAACGTTTAA GGCTGTTGCA GAAAAGGTTT GTAAACTGAG 
    TGTCAAAGAA GCAAAAGTAG AATACCCCAA CGTTCGTGAT CATGCCTACT 
    TATGCATGGA TCTTATCTAC GAATACTCCT TGCTCGTTGA CGGCTTCGGT 
    CTACATCCAA GTAAGGAGAT AACGCTGGTA GACAAGGTGA AGCATGGGGA 
    GTACTACATT GACGCGGCTT GGCCATTGGG TACAGCTATT GAAGCTGTGT 
    CACCCAAAAA ACGGCTTCGA GAAATATACA AATGATCTTG AGATCGATGT 
    ACTAGCTACT TTGGAAGTTA GGATATCGAT TGTTGTATGA TCGATGTCTG 
    TGTGCTGGTT ATTACAGTAT AACTGAGTAT CATGATATAT AAGTAGTATG 
    TTAATAATGG GTCGAGCTAT CAATAGATCG AGGCGGCCAT GCTCTTTGTC 
    CTAGACTCCA AGTTGTGTAT GTTTGAATAT ATAGCAGCTT TCTATATATA 
    ATTACGTACT ATCACAGAAA TCATCGGTTG TGTTTGTGTG TCATGAGCAC 
    GCATGTCTTG TATGTAAAAG ACTGAACATC TGGTGCACAT TTGAGTATTT 
    GACCTG

    Gene models with high sequence identity

    1. AT3G04080.1 [+] show detail - apyrase 1
      E-value: 4e-116; Score: 415.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Nucleoside phosphatase GDA1/CD39 0
    HMMPfam Nucleoside phosphatase GDA1/CD39 2e-108
    HMMPanther ADENOSINE DIPHOSPHATASE 2.6e-171
    HMMPanther Nucleoside phosphatase GDA1/CD39 2.6e-171

    See the detailed result >

    AT3G04080.1

    Model type
    Protein coding
    Short Description
    apyrase 1
    Curator Summary
    Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.
    Computational Description
    apyrase 1 (APY1); CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: apyrase 2 (TAIR:AT5G18280.1); Has 1435 Blast hits to 1431 proteins in 229 species: Archae - 0; Bacteria - 35; Metazoa - 605; Fungi - 313; Plants - 348; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR