K38521

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38521

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Shape::zigzag)
  • abnormal (PATO:0000460)
    (Stem::Others)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38521

Determination of introduced cDNA(s)

  • J033125H15 - Rice Full-length cDNAs - Original: J033125H15

    full reading [+] show sequence

    Nucleotide sequence: J033125H15 - full reading
    GGGAAGAAGC AAAGCAATCT CCGTGAGCGG TGATGGCGCA GCAGTGGCGA 
    TCTCTCCTCT TCCTCCTCCT CCTCCTCCTC GTGCCCTTCG CCGCCGCCGC
    CGGGCAGGAT GCGCCGTTCG TGGTAGCACA GAAGAAGGTT GCGCTGTCCC
    GCCCGGGTCC AGGCGTGGAG CGCCTCGCCG TCACCCTCAA CCTCTACAAC
    CAGGGTTCCG CGACCGCCTA TGATGTTAGC TTGAACGACG ACTCTTGGCC
    ACAGGAGGCT TTTCAACTTA TCTCTGGAAC CACATCAAAG ATTGTGGAAA
    AACTTGATCC TGGTGCTACT GCTTCCCACA ACTTCATCTT GGAGACCAAA
    GTGCAGGGCA AGTTTCAGGG CTCTCCTGCC ATTATCACAT ACCGTGTTCC
    CACAAAGGCC GCACTTCAGG AGGCTTACTC AACGCCCATG TTTCCACTTG
    ATATTCTTGC TGAGAGACCT CCCCAACAGA AGTTTGAATT GGCTAAGAGA
    CTTGTGGGGA AATATGGGTC GCTGGTCTCC GTTGTTTCCT TTGTCGGTGT
    GTTTATCTAC CTGGTTGCAA GCCCGTCAAA ATCCACTGCT GCAAAAGGAA
    GCAAGAAGAG GCGCTAAATC TGTTTTGTTG CCTTTTTTTT GTTGTATTTG
    GTTTTACAAG AATGTACTCT CTCAGGTTTT ATAAGGTTCT CCTATGTACT
    CTAAGGGATT AACTAGACTA AGGCATCATC TGTCATTTTG GCCTTCTGTA
    GTTGAGCATC TCGGGTGAGG CCTGAGCTGA CTGACTTAAA ATCAGAGGTG
    TAGATTTGAT ACATCTTAAA TCATTTTAGT ACATTCAACC TTTTGTGCCT
    GGTTCTC

    Gene models with high sequence identity

    1. AT5G14030.4 [+] show detail - translocon-associated protein beta (TRAPB) family protein
      E-value: 5e-45; Score: 178.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther Translocon-associated beta 7.2e-37
    HMMPfam Translocon-associated beta 2.4e-57

    See the detailed result >

    AT5G14030.4

    Model type
    Protein coding
    Short Description
    translocon-associated protein beta (TRAPB) family protein
    Computational Description
    translocon-associated protein beta (TRAPB) family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translocon-associated beta (InterPro:IPR008856); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR