K38537

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38537

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38537

Determination of introduced cDNA(s)

  • J013075G21 - Rice Full-length cDNAs - Original: J013075G21

    full reading [+] show sequence

    Nucleotide sequence: J013075G21 - full reading 
    GGATTGTGGC TTGATAGGAT CGTCCGGACC TGACGGGAGA AGGCGTGGGT 
    TCGTGCGACG GGACCTCGAT TCGTCCATCC AGCTTCCACT ACCCCTCCGC 
    GCGCTGCCTA GATCTTTCCT CTCTCTCGCA CCCTCTTATT GGCGGAGGAG 
    GAGGAGGGAT GGTGCGGGAG GTTGCGGAGA GCTGTGCCGA CGGGGTGGTG 
    ATGGAGATGG TGGCGGCCTA CTGCGGCCGC TTCTACGCCG CCAAGCCGGA 
    GCTCGCCGCC CGCCGCATCG AGGCCATCGG CTTCCAGGTC GGCCACCAGC 
    TCACGGAGAG ATATACCATG GAGCGCCCTC GATTTAGTGA TCATCTTGAA 
    GCAATCAAAT TTATCTGCAA AGACTTTTGG TCAGAGCTAT TCAAGAAGCA 
    GATTGACAAT CTTAAAACTA ATCATAGGGG AACATTTATT CTTCAAGATA 
    ACCGTTTCCG GTGGCTTACT CGTGTTTCTA TAGATCCATC TGTAGAGAGC 
    ATGGATGCAA CTGACAATGA CTCTGCAACA CTAGGGGATA GCGCAGCCCA 
    AACAACAAGC ATGCTTCTGT ACTTTCCATG CGGGATAATA AGAGGTGCCT 
    TGACCAATTT GGGTATTTCG TGTTCTGTCA CTGCAGACAT GTCCAACCTT 
    CCAGCATGTT CTTTTGTTGT GCGCATAAAA ACATGAGCTG CAGATTTTAT 
    GCCTGCTTGT TCGATCAAGC GGTTTGAACA TTAAAGAGTG CAAGCACGCA 
    ATAGCCTGGG AAATACGCCT TGTAGCTGCT CCTTTTTCTT TCTCTTTGTT 
    CTTAGAGGCA CCTCTTTACT TACTGACTTC ATCATACCTT CCTTTGTGCA 
    CATCTTAAGA TTGGGTGTAA TTTTGTGATT CGTGTGAACA AGAGAAGACA 
    AAATGTAATA TTTCTCCTGA GATACTGGCT AGAGCCATGT AATTTTGTTG 
    TCTAGCAGTG GAGAATGTTT TATCTTGT

    Gene models with high sequence identity

    1. AT3G05000.1 [+] show detail - Transport protein particle (TRAPP) component
      E-value: 4e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transport protein particle (TRAPP) component 6.5e-38
    HMMPanther TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2e-70

    See the detailed result >

    AT3G05000.1

    Model type
    Protein coding
    Short Description
    Transport protein particle (TRAPP) component
    Computational Description
    Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR