K38541

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38541

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38541

Determination of introduced cDNA(s)

  • J013033B01 - Rice Full-length cDNAs - Original: J013033B01

    full reading [+] show sequence

    Nucleotide sequence: J013033B01 - full reading 
    GCTCTTCTTC TTCTCACTTC ATCAACAACC TCACCTCGCC TCGCCTCTTC 
    TCGCGGCCAA CGAGAGAGGG AGAGGGAGAG CTAGGACCAC CGCCACTGCC 
    TCGGGAAGTA GGTGGCTCCC CTGCTTTCCC TCCTCTCCTC CGCCGTCGCC 
    GAGGCAGCCA GCCAAGTCGT CCCAGCAGGT GGTAGGCTAC TAGTCCGGGT 
    GGCCGGCAGT GAGCAGGAGG AATCATCTCT GGCGTTCTTG TCTCCGAGGA 
    ACTTTGATTC TTTCTGGGAG GGGATTTGGT GTGCTGCTGC TGCTCCAGAT 
    GCTTCCCACC AACAGGAACA GGCCCCAGCA GAGGCCTGCC AGATCTTGGT 
    ATTTCATCTC AGACATGGAC TTCTCCGATC CGAAGCGCAA GCCGCGGTAC 
    CTCAGTAAGA TCCTCATGGT GGCGCTCCTC ACCGCCATGT GCGTCGTCAT 
    GCTCACACAG CCGCCCTGCC ATAGGAGGAC TCCCAGTGTG TTCTCCATCC 
    ATGAACCCGG AGTCACGCAT GTTCTAGTGA CGGGCGGCGC TGGATATATC 
    GGTTCGCACG CTGCGCTTCG GCTGCTGAAG ATTCCTTCAG AGTCACCATA 
    GTGGATAATC TTTCAAGAGG AAATATGGGG GCAATCAAGG TTCTTCAGAA 
    CTTGTTTTCA GAGCCTGGGC GGTTGCAGTT CATCTATGCT GATTTAGGCG 
    ATCCAAAAGC TGTTAATAGA ATATTTGCAG AAAATGCTTT TGATGCTGTC 
    ATGCACTTTG CTGCTGTCGC TTATGTTGGT GAGAGCACAC TTGAGCCTTT 
    GAGGTACTAT CATAACATCA CCTCAAACAC TTTAGTTGTG CTAGAGGCTA 
    TGGCAGCACA CAATGTGAGA ACCCTGATCT ACTCTAGCAC ATGTGCCACC 
    TATGGAGAAC CCGAGAAGAT GCCTATCACC GAAGGAACTC CCCAGTTTCC 
    GATCAACCCA TATGGTAAAG CCAAGAAGAT GGCAGAGGAC ATCATCTTGG 
    ATTTTTCCAA ATCCAAGAAG GCAGACATGG CTGTGATGAT TCTAAGATAC 
    TTCAACGTCA TTGGTTCTGA CCCTGAAGGA AGGCTTGGCG AGGCTCCAAA 
    ACCTGAATTA CGGGAGCATG GCCGTATATC TGGTGCATGC TTTGATGCTG 
    CACTGGGGAT AATTCCTGGT TTGAAGGTTA AAGGTACTGA CTATGAAACA 
    CCTGACGGTA CTTGTGTAAG AGATTACATC GATGTCACTG ACCTCGTTGA 
    CGCCCATGTG AAGGCGCTCA ACAAGGCGGA AAGGGGCAAA GTTGGCATAT 
    ACAATGTTGG CACAGGCAAA GGTAGGTCAG TGAAAGAATT TGTCGAAGCT 
    TGCAAGAAGG CAACAGGAGT TGACATCAAG GTCGACTACT TCCCTCGTCG 
    ACCCGGTGAC TATGCCGAAG TGTACAGCGA TCCCGCAAAG ATCAACAGCG 
    AGCTGAACTG GACTGCTCAA CATACCGATC TCCTGGAGAG CCTCAGGGTT 
    GCCTGGACAT GGCAGAAGAA GCACCGGAGC GGCTACGGAC CCCCTCAGGC 
    CATGGTTTTG TGAAGAGAAT TTACCCTGTA GCATCTATTG GCTGAAAACT 
    TAAAAACTTA GGTGGATATA TTCTTAGGAA TGTTCATCAT CAAGGGCTTT 
    CAATTGCTCA CTCACAGAAG TTATATGTAA TATAGCGCTT ATGGTCATTC 
    GTTCAATTCT TGAGATTCAT ATTATGGGAG GATTTTAGAA GATTGTAATA 
    TTGTTGATGT ATTCAGTATA CAATAAAAAT CCAACAAGCT ATCCTCAGAA 
    TTGTTATCCT GGTTGGTTTC TC

    Gene models with high sequence identity

    1. AT1G30620.2 [+] show detail - NAD(P)-binding Rossmann-fold superfamily protein
      E-value: 0; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D NAD(P)-binding domain 7.8e-44
    Gene3D NAD(P)-binding domain 0.00048
    HMMPanther UDP-glucose 4-epimerase 1.3e-07
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.3e-07
    HMMPanther UDP-glucose 4-epimerase 1.3e-133
    HMMPanther NAD DEPENDENT EPIMERASE/DEHYDRATASE 1.3e-133
    superfamily NAD(P)-binding domain 9.9e-75
    superfamily NAD(P)-binding domain 8.3e-07
    HMMPfam NAD-dependent epimerase/dehydratase 5.3e-40
    HMMTigr UDP-glucose 4-epimerase 4.6e-121

    See the detailed result >

    AT1G30620.2

    Model type
    Protein coding
    Short Description
    NAD(P)-binding Rossmann-fold superfamily protein
    Curator Summary
    encodes a type-II membrane protein that catalyzes 4-epimerization of UDP-D-Xylose to UDP-L-Arabinose in vitro, the nucleotide sugar used by glycosyltransferases in the arabinosylation of cell wall polysaccharides and wall-resident proteoglycans.
    Computational Description
    MURUS 4 (MUR4); FUNCTIONS IN: UDP-arabinose 4-epimerase activity, catalytic activity; INVOLVED IN: plant-type cell wall biogenesis, arabinose biosynthetic process, nucleotide-sugar metabolic process; LOCATED IN: Golgi apparatus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040), UDP-glucose 4-epimerase (InterPro:IPR005886); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT4G20460.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR