K38542

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38542

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38542

Determination of introduced cDNA(s)

  • J033115N23 - Rice Full-length cDNAs - Original: J033115N23

    full reading [+] show sequence

    Nucleotide sequence: J033115N23 - full reading
    GATCCATCTT GCCTAGTGCA AGCGTGCAAA GCCAAAATTC AAGAAATCAC 
    CTCGCTCCAT CAAGTGAGCA AGCAAAACCG ATCGAACAAG TTCCAATGGC
    TGACGAGCCA TGGAGGCTGC CAAACATAGT GCAAGAACTG GCCGCCGGCG
    TGCAGGAGCC ACCGAGCCGG TACCTGCAAG ACCTCGCCGG CGGTGACCAG
    CTCGCCGGCG CCGAGATACC GGAGCCCATC CCGACCATCG ATCTCGGCCG
    GCTGTCAGGA TCGGACGGTG CCGACGAGGC TGCCAAGCTG CGGTCGGCTC
    TGCAGAACTG GGGCCTCTTC CTGGTTTCTA ACCATGGCGT TGAGACCTCA
    CTGATCGATG CTGTGATCGA GGCTGCGAGG GAATTTTTTC GGCAGCCAGT
    TGAAGAGAAG AAGAAACTGA GCAACCTGAT TGATGGCAAG CGTTTTCAGA
    TAGAAGGGTA TGGAAATGAT CCTGTGCAAA CCAAAGATCA GATCCTGGAT
    TGGTCTGATC GGCTGCATCT CAAGGTTGAG CCAGAGTGTG ACAGAAATCT
    AGCCTTTTGG CCCACACATC CCAAATCTTT TAGGGATATT CTACATGAGT
    ACACACTGAA GATCAAGACG GTCAAAAACG ATATCCTCCT CGCATTGGCC
    AAGCTCTTGG AGCTTGATGA GGATTGCCTC CTCAACCAGT TCAGCGACAG
    GGCCATCACT ACTGCCAGAT TCAACTACTA CTCTCCTTGT CCAAGACCTG
    ATCTTGTGTT AGGCCTGAAG CCTCACTCTG ACCTCTGTGC TCTCACCGTT
    CTTCTCACTG ACAAAGAAGT CGGTGGCCTG CAAGTTCTTA GAGATGGAAC
    ATGGTACAGT GTTCCAGCTG TGCGAGATTA CTCTCTTCTG ATTAACATTG
    GTGTTACACT GGAGATAATG ACCAATGGGA CCTTCAGGGC TCCATTGCAT
    AGGGTGGTGA CAAATGCAGA GAGGGAGAGA ATGTCGGTGG CCATGTTCTA
    CGCTGTGGAT GGCGAGAAGG AGATAGAGCC GGTGGCTGAG CTGCTGGGGC
    TGAAGCAACA ATCAGCACGG TACAGGGGAA TCAAGGGCAA GGACTTGTTG
    ATTGGACACT ATGAACATTT CTCTCGTGGT GGTAGAGTTG TCGATTCATT
    GAAGATCTAA CGAAGGGTAA CCGCAAAGAG TGCTATTAGT ACTACTGTAC
    TCTCTACATA GATAATATTA TACTACTTGT AAAAACTATA TGAGCCATCG
    ATTTAGTAGG CTATAATGGT ACTTTTTCGT CTATACGAAT TATGCTATTT
    TGT

    Gene models with high sequence identity

    1. AT5G20400.1 [+] show detail - 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
      E-value: 1e-69; Score: 261.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Oxoglutarate/iron-dependent oxygenase 1.5e-19
    Gene3D no description 8.8e-82
    superfamily Clavaminate synthase-like 1.1e-83
    HMMPanther ETHYLENE-FORMING-ENZYME-LIKE DIOXYGENASE 8.2e-124
    HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 8.2e-124

    See the detailed result >

    AT5G20400.1

    Model type
    Protein coding
    Short Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
    Curator Summary
    encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus.
    Computational Description
    2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein; CONTAINS InterPro DOMAIN/s: Oxoglutarate/iron-dependent oxygenase (InterPro:IPR005123); BEST Arabidopsis thaliana protein match is: 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (TAIR:AT1G49390.1); Has 8498 Blast hits to 8450 proteins in 980 species: Archae - 0; Bacteria - 1051; Metazoa - 121; Fungi - 1005; Plants - 4926; Viruses - 0; Other Eukaryotes - 1395 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR