K38617

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38617

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38617

Determination of introduced cDNA(s)

  • J013101C03 - Rice Full-length cDNAs - Original: J013101C03

    full reading [+] show sequence

    Nucleotide sequence: J013101C03 - full reading
    GCCCCCTCTT TTCTTCCCCC CTCTCTCTCC CCCCAGCATC GTACCAAACC 
    ACACAACCGC AGCGACGGCA ACACGAAGCT CTCCTCTCCG GCGAGAATAG
    CCAAGAACGC GACGCGACCA CACCCAAGAG GCCGAACAGA TCGAGCTCAA
    GAAGGTTTTA GCCCATGGGG ATGGATTACT ACAAGATCCT GGGCGTCGAC
    AAGGCCGCCA GCGACGACGA CCTCAAGAAG GCGTACCGCA AGCTCGCCAT
    GAAGTGGCAC CCTGACAAGA ACCCCAACAA CAAGAAGGAG GCGGAGAACA
    AGTTCAAGCA GATCTCCGAG GCGTACGAGG TGCTGAGCGA CCCGCAGAAG
    CGAGCGGTGT ACGACCAGTA CGGCGAGGAG GGGCTCAAGG GGCAGGTCCC
    GCCGCCGGGC GCCGGCGGGG CCGGCCCGGG AGGCGCGACG TTCTTCTCCA
    CCGGCGGCGA CGGGCCCAAC GTGTTCCGGT TCAACCCGCG CAACGCGGAG
    GACATCTTCG CGGAGTTCTT CGGCTCGTCC AGCCCGTTCG GCGGCATGGG
    CGGTGGCATG GGCGGCGGCA TGGGGGGAGG GCCCGGGATG CGGACAGGCG
    GCACGCGGTT CTCGTCGTCG ATCTTCGGGG ACGACATCTT CGGCTCGGCG
    TTCGGCGGCG GCGCCGACGG GCACCACGGG ATGCACGGCG GTGGCGCCGG
    GAGGGCGTTG AAGGCGCCGG CGATCGAGAG GAAGCTGCCG TGCAGCCTGG
    AGGAGCTCTA CAAAGGCACC ACCAAGAAGA TGAAGATTTC CAGGGAAATC
    GCTGACGCCA GTGGGAAGAC AATTCCAGTG GAGGAGATCC TGACCATCGA
    TGTGAAGCCT GGGTGGAAGA AGGGCACCAA GATCACCTTC CCGGAGAAAG
    GAAACGAGCA GCCGAACGTG ATCCCGGCCG ACCTCGTCTT CATCATCGAC
    GAGAAGCCGC ACCCGGTGTT CACCCGTGAC GGCAACGACC TCGTCGTGAC
    GCAGAAGATA CCGCTCGCCG AGGCCCTGAC CGGCCACACC GTCCACCTGA
    CTACGCTCGA CGGCCGCAGC CTGACGATCC CGATCACCTC CGTCATCAAC
    CCGGGCTACG AGGAGGTCGT CCGCGGCGAG GGCATGCCCA TCCCCAAGGA
    CCCCTCCAAG AAGGGCAATC TCAGGGTCAA GTTCGACATC AAGTTCCCGG
    CGAGGCTCAC CGCCGACCAG AAGTCCGGCG TCAAGCGGCT GCTGGGGCAG
    TAGATCGAGC AACTGCACCG ATGTAGTATC AAAGCCTTTT CTTGTGTTGG
    TGGTGTTGAA CTGGTGATCA TCCGGCAGCC GCGACGAATT TCTCGTTGAG
    AGCTTTTTCA GGTCATGTGA CACGATGCAA AAAGGCAATG CGGCCTTAGA
    TGTGTGAGAT ACTGATGAGA ACTAGTAGAA ACGTTATACA CAGCTTTTGT
    GGTGC

    Gene models with high sequence identity

    1. AT2G20560.1 [+] show detail - DNAJ heat shock family protein
      E-value: 3e-109; Score: 392.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Heat shock protein DnaJ, N-terminal 26.047
    HMMSmart Heat shock protein DnaJ, N-terminal 1.2e-33
    HMMPfam Chaperone DnaJ, C-terminal 5.9e-30
    HMMPfam Heat shock protein DnaJ, N-terminal 6.6e-30
    HMMPanther HSP40-RELATED 4.9e-177
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 4.9e-177
    Gene3D Heat shock protein DnaJ, N-terminal 1.3e-28
    Gene3D no description 1.9e-25
    Gene3D no description 5.3e-26
    FPrintScan Heat shock protein DnaJ 2.2e-14
    FPrintScan Heat shock protein DnaJ 2.2e-14
    FPrintScan Heat shock protein DnaJ 2.2e-14
    PatternScan Heat shock protein DnaJ, conserved site 0
    superfamily Heat shock protein DnaJ, N-terminal 1.7e-34
    superfamily HSP40/DnaJ peptide-binding 1.7e-23
    superfamily HSP40/DnaJ peptide-binding 2.9e-17

    See the detailed result >

    AT2G20560.1

    Model type
    Protein coding
    Short Description
    DNAJ heat shock family protein
    Computational Description
    DNAJ heat shock family protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), HSP40/DnaJ peptide-binding (InterPro:IPR008971), Chaperone DnaJ, C-terminal (InterPro:IPR002939), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: DNAJ heat shock family protein (TAIR:AT4G28480.1); Has 27936 Blast hits to 27733 proteins in 3449 species: Archae - 187; Bacteria - 10270; Metazoa - 4781; Fungi - 2609; Plants - 2869; Viruses - 17; Other Eukaryotes - 7203 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR