K38622

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38622

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38622

Determination of introduced cDNA(s)

  • J023048H06 - Rice Full-length cDNAs - Original: J023048H06

    full reading [+] show sequence

    Nucleotide sequence: J023048H06 - full reading 
    GGAGCTCCGA GCAAGAAGCT CTATCTTCTC CTCTCCTTGT CAACCTAGCT 
    AGTAGCTAGG TAAGTTACCT CGATCGTGCA GGCGATGGCA ACGCCGGCAG 
    GAGGACGGCC GTCGCAGCCG CAGCCGCAGG CGCAGCAGCT GTCGGTGGAT 
    TTCGAGGCGC TGAGCTACAT CAGCAGCCTC GTGGAGGCGT TCCAGGCGTT 
    CGACTCCGAC AACGACGGCC TCGTCACGGC GCCGGAGCTG AGGGGCCTCC 
    TGGCGTCGCT CGGCCTCGAC AAGCCGGAGC ACGAGGTGCG CGACATGCTG 
    GCGCGCGCCG ACGCCGACCG CGACGGGAAG CTCAGCGTGG AGGAGCTCCT 
    GGACGTGATG AACGCCGGGC AGCTCGGCCT GGGCGCGCTC GGCGCGCTGC 
    TGCAGTCCGC CGTGCCGGCG CTCGAGTCCG CGGCGGGGCC CGACGGCGTC 
    CTCGGCGCCG ATGAGCTCGC CAGGCTGCTC AGCGTCATGG GCACCGCCAG 
    CGTTGAGGAC TGCATGGAGA TCATCGCCTG CATGGACGGC GACGGCGATG 
    GCGCCATCAG TGTCGAGGAG TTCAGGCTCA TGGCCCAGCT GCTCTAGCTT 
    ACTATCCACT CCGTAGGCTC TACCAAACAT ACAACTTTGC AAGAAGCTAC 
    GCGTTGTTGG AGAATACTTG ATGATGGTTT TAGCAATAAG AGATCGAGTT 
    TATCAACTCT G

    Gene models with high sequence identity

    1. AT3G10190.1 [+] show detail - Calcium-binding EF-hand family protein
      E-value: 2e-10; Score: 62.80

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    PatternScan EF-Hand 1, calcium-binding site 0
    HMMPfam EF-hand 3.9e-06
    HMMPanther CALMODULIN 1.9e-22
    Gene3D EF-hand-like domain 7.7e-19
    HMMSmart Calcium-binding EF-hand 0.0093
    HMMSmart Calcium-binding EF-hand 0.0015
    HMMSmart Calcium-binding EF-hand 0.0038
    ProfileScan EF-HAND 2 12.533
    ProfileScan EF-HAND 2 11.947
    ProfileScan EF-HAND 2 13.286
    superfamily EF-hand 1.2e-27

    See the detailed result >

    AT3G10190.1

    Model type
    Protein coding
    Short Description
    Calcium-binding EF-hand family protein
    Computational Description
    Calcium-binding EF-hand family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: Calcium-binding EF-hand family protein (TAIR:AT2G41410.1); Has 18786 Blast hits to 12756 proteins in 1414 species: Archae - 1; Bacteria - 149; Metazoa - 7817; Fungi - 3299; Plants - 4581; Viruses - 0; Other Eukaryotes - 2939 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR