K38642

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38642

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38642

Determination of introduced cDNA(s)

  • J023104P21 - Rice Full-length cDNAs - Original: J023104P21

    full reading [+] show sequence

    Nucleotide sequence: J023104P21 - full reading
    GACGCGCGCA TTCAGTTTTC ATTTCAGTTC GAAATAAACA CCGAAAGTTG 
    CCCAAATACT CTCCCAAGTT ATTTTGTTCT TGTTCTCTGC ATTCTCTGAA
    TTCTCTGTCT CCCTGAAAGT TTCTTCAGTC TGCTGTGCCG GATAGCTACA
    GGACGCCCAC AAGGTGTTCG ATTGGTGTTC TTCGCCAACA AGTGGTATCA
    GAGCACTCAG GTTGAGGGCT GATCTGACAC CATGGCGTTG GTTCCGGCGG
    GAGCCGCAGC GGATCCGGCG AGGGGGAGCT CAGGGAGTGC GTTCTCCTAC
    CCACAACTCA CGGCGACGAA TTACACCAGC TGGTGCATTC GCGTTCAGGC
    AATGATGGAG GACCAGGGCG TGTGGGACGC CATCGAGCCG GCGGCCGGGG
    TGGCCGTCGA CCCAAGAAGG GACAAGAAGT CGAAGTCCCA TCTGCTGCAG
    TCCCTCCCGG AGGACTTGCT GATGCAGGTG GCAAAGAAGA GATCGGCAAA
    GGAAGTGTGG GATTGCTTGA AGACAAGGTT CGTGGGCGCG GACCGCGTTC
    GCGAAGCGCG CCTGCAGACG TTGAAGGGTG AATTTGGTGC CATGGTGATG
    GAGCCGGGGG AAACTCTGGA TCAGTACGCG GGCCGCATCA CCGCGATGAG
    CGTGCGTCAC TCGGTGTTGG GCTCGACACT GAGTGATTCC GCGATAGTGA
    AGAAGCTGTT CGACACGGTG CCAGAGAAAT TCATCAGCCT CGTCGCAGGT
    ATTGAGCAGT TTTATGAGAT TGATAATATG CCATTTGAGG AGGCGGTGGG
    TCGTCTCAAG GCCTACGAAG AACGAGTTCG CAAGAAGAAG GCGGCCGCTG
    GTGGTGTCAC CGCCGACGGT CAAGTACTTC TCACTCAGGC GGAGTGGGAG
    GCGCGTTTCA GGAAGGACGG CAGCGAGTCG TCTTCGCCGC AGAAAAACAA
    ACCTCCCAGC GACAGGGGAA ACCGTGCCCA GGGCGGACGC GGTCGCGGCA
    GAGGGCACGG TGGAGGTGGT GGACGCGGCA GCGCGCCGCG GAACAGTGGC
    GCTGGTGGCT CTGGCGGCGG TGGCCGTGAC AAGAGCCACA TCAAGTGCTA
    CAACTGCGAA GAATTCGGCC ACTACTCCAC CCAGTGCCCT CATCCCAAGA
    AGAAGAAGGT GGAGGCCCAT CTCGCGCAAA CCGACGACGC AAACCCTGCA
    TTGTTACTGG CGGTGACCGA AGACGAGCCG GCGAGCGGGC TGGTCGTACA
    CGAGGAGCGT GTGTGGCCGC AGCTGCTGTT GGCTGACAGC GGAGCAGCCA
    CCGGGGACAT CTGGTTCCTG GACAATGGGG CAAGCAACCA CATGACGGGT
    GATCGTGCTA AGTTCAGAGA TCTAGACGTA TCAATCACCG GGAGCGTCAA
    GTTCGGGGAC GCCTCAACTG TGAAAATTCA GGGGAAAGGG TCTATCCTGT
    TCTCCTGCAA GAATGGGGAT CAATGGCTGC TGCAGGATGT TTTTTATATC
    CCTAGTCTGT GTTGCAACAT GGTGAGCTTG GGCCAGCTCA CAGAAACGGG
    GCACAGAGTG GTGATGGATG AAGATGTGCT CGAGGTGTTC GACAAAAGTC
    CCCTGCGGCT GGTTATGCGG GTGAGGCGCA CCCCTAATCG GCTGTACCGG
    ATCGAGCTGA AGCTAGCCAC TCCGGTGTGC CTGCTGACAA GGATGGATGA
    GCCAGCATGG CTCTGGCATG CACGGCTTGG GCATGTCAAT TTCCAGGCGA
    TGAAGCTGTT GGCTGACAAG GGCATGGCTG GTGGCATCCC GGCGATCACA
    CATCCAAACC AGCTCTGTCA GGCATGTCTG GTTGCAAAGC AGATAAGGCA
    GCCGTTTCCC GCAACGGCGA ACTTCAGGGC GGAGGAGCCG CTCGAGTTGC
    TCCACATTGA TTTATGTGGA CCGATCACCC CGACAACTAT GGCCGGTAAT
    CGTTACTTTA TGCTAATTGT TGATGATTTC TCACGGTGGA TGTGGATGTT
    CGTGATCAAA ACGAAGGACC AGGCACTAGA GGCTTTCACC AAGTTCAAGC
    CGCTGGCCGA GAACACGGCC GGGCGGCGCA TCAAGACGCT GAGATCGGAT
    CGCGGTGGCG AATTCCTGTC GGGCGAATTC GCGCAGTTGT GCGAGCAGGC
    GGGCATCCAG CGGCATCTGA CGGCGCCATA CTCACCCCAG CAAAACGGGG
    TGGTGGAACG CCGAAATCGT TCGGTAATGG CGATGGCACG ATCTCTGATG
    AAAGGGATGT CAGTGCCGGG CAGGTTTTGG GGGGAGGCGG TGCGCCATGC
    GGTGTATCTC CTCAACCGGC TACCGACGAA GGCGATGGGC GATCGGACCC
    CGTTCGAGGC ATGGACGGGG CGCAAGCCGC AGCTGGGACA CCTGCGGGTG
    TTTGGGTGCA TAGCACACGC CAAGATCACG ACGCCCAACC AGAAGAAACT
    TGATGACCGG AGCGCGCCGT ATGTGTATCT CGGCGTGGAA GAAGGCAGCA
    AGGCGCACCG CCTGTTCGAC CCGCGTTGTG GGCGTATCCA TGTAAGTCGT
    GATGTCATTT TTGAAGAAAA TGTACCTTGG CAATGGAGTG TAGTCGCAGG
    GGAGCAAAAC TCTACCGAGT TCACGGTGGA GGAGGATGGA GTTGATGCAC
    CGCCGGCAGG AGCGCCGGCC TACCCAGTAC CGCGGTACCG GGCGCCATCC
    CCGGCAGTCC CGCAATCGCC TCCGGCAAGC CCGGTAGGGG CGTCATCGTC
    ATTGCCGACT TCGCCCCAGT CATCACCGAG CTCTACACCG CCTTCAACAC
    CTGCTACCGG CTCTGCCGGG CCGGTGGCGT CACCAGGTTC CGGCGGCGAC
    CTTAGAAGCG ATGAGGGTCC CGTCCGGTTC AGGAGTCTTG AAGATATCAT
    GCGGGAGGCA CCCCGCGTGG ACCTGGTGGA GGATGAACAC GATGGGGACG
    CGCTGCTTGC AGAGATGGAG GAGCCATCGA GCTACCGCGA GGCAGCTGGC
    CAGCCGGCAT GGGAGAACGC CATGGCACAG GAGCTGCAGG CGATTGAGAA
    GAATTCAACA TGGGCTCTCA CTGCATTGCC GGCAGGACAC AAACCCATTG
    GCCTCAAGTG GGTGTACAAG CTGAAAAAGA ACACTGCCGG CGAAGTAATC
    AAGCACAAGG CTCGTTTGGT TGCAAAGGGC TATGTTCAGC GTCAAGGGGT
    GGATTTTGAA GAGGTGTTCG CGCCAGTGGC GCGGCTTGAC ACAGTTCGTG
    TCATCCTGGC TATCGCAGCT GATCGGCGGT GGGAAGTGCA CCACCTCGAC
    GTCAAATCGG CGTTCTTGAA TGGCGATCTT GAAGAAGAAG TGTACGTAGC
    CCAGCCAGAG GGTTTTGTGA AACGAGGAGA AGAACACTTG GTGCTCAGGC
    TGAGCAAGGC GCTCTATGGA TTGCGCCAGG CCCCGCGGGC GTGGAACACG
    CGTCTCGACA AGTGCTTGAA AGAACTCGGT TTTGCACGGT GCACGCAGGA
    GCAGGCCGTG TATACTAGAG GAAAGGGGCA AGCTGGTGTA ATCGTTGGTG
    TGTATGTTGA TGACTTGATT GTCACAGGAG AAAATCCACA TGAGATAGCC
    ATGTTCAAGC AGCAGATGAT GGGGGAATTT GAGATGAGTG ATCTCGGTCT
    TCTCTCTTAC TATCTGGGGA TAGAAGTAAT TCAGGGGGAG AATGGGATTG
    CTATCAAGCA AGCTGCGTAT GCGAAGAAGA TTCTGTCTCA GTTTGGTATG
    CAGGGATGTA ATCCCACCTC AATCCCCATG GAGCCACGGT CGCTGCTGCA
    CAAGGATGCT GATGGAAATC CAATTGATGC GACCGAGTAC CGGCGTGTCA
    TCGGGTGCCT GCGATACTTG TTACACACCA GGCCGGATCT GTCCTACGCC
    GTTGGCGTGG CGAGCAGGTT CATGGAGCGG CCGACAACGA TGCATCTCAA
    GGCGGTCAAG ATGATACTCA GATATCTAAA GGGGACGCTG GACTCTGGTC
    TGGTGTTTGC AAGCGGCAGT GGCTCGTTGG ACATCACGGG TTTCACTGAC
    AGTGACTTGG CAGGTGACAT GGATGACCGT CGGAGCACCG GCGGCATGGC
    GTTCTATGTG AACAGCAGCT TGGTGTCTTG GTGTTCTCAA AAGCAGAAGA
    CAGTGGCGCT CTCGTCTTGC GAGGCAGAGT TCATGGCGGC CACTGCAGCA
    GCATGTCACG CGCTCTGGCT TAGGGCGTTG CTGAGCGAGA TGATGGGTAC
    TGAAGCAAAG CGGGTGAAAC TTTTTGTTGA CAACAAGTCG GCGATCGCCT
    TGATGAAGAA TCCTGTGTTC CACGGGAGGA GCAAGCATAT TGATACCCGC
    TACCATTTCA TTCGTGAATG TGTTGAGAGT GGGCAGATTC TGATTGAGTT
    CGTTCGTTCT GAGGAGCAGC GAGCAGATGC AATGACAAAG GGACTGCCGG
    CGGCGAAGCT GGCGACTGCA CGGCACCTGT TGGGTGTGCG TGATCTCAGG
    CCACGCCAAG ACTAAGGGGG AGTATGTTGC AGTTATTCCT GGTGTGGCCC
    GAGCTGATCC GGACGACGCG GGAATGCAAC GGTGTGTAAC GGTGTGGCGA
    GATGCCCGGG CAAAGGAGAT CGGTGGCGAC TAGTTCTTGC AGCGCAGGAA
    GCGCGATGAA GCAGAGTGCA TGACGGGGAG TAACCTCGTC GTTTCCACAT
    TTGTAGGATC AAAGTTGTTA GCCTATAAAT AGTTGGTGGT AACAGAATTT
    GTACGCGCGC ATTCAGTTTT CATTTCAGTT CGAAATAAAC ACCGAAAGTT
    GCCC

    Gene models with high sequence identity

    1. AT4G23160.1 [+] show detail - cysteine-rich RLK (RECEPTOR-like protein kinase) 8
      E-value: 5e-93; Score: 340.00

     

    InterPro Scan Digest

    Program Description E-value
    Coil coiled-coil 0
    HMMPfam Reverse transcriptase, RNA-dependent DNA polymerase 2.7e-99
    HMMPfam Integrase, catalytic core 6.9e-30
    PatternScan EGF-like region, conserved site 0
    Gene3D no description 2.1e-36
    ProfileScan Zinc finger, CCHC-type 9.62
    ProfileScan Integrase, catalytic core 27.953
    HMMPanther GAG-POL-RELATED RETROTRANSPOSON 0
    HMMSmart Zinc finger, CCHC-type 0.0033
    superfamily Polynucleotidyl transferase, ribonuclease H fold 3.3e-48
    superfamily DNA/RNA polymerases 4.7e-34
    superfamily Retrovirus zinc finger-like domains 0.0000013

    See the detailed result >

    AT4G23160.1

    Model type
    Protein coding
    Short Description
    cysteine-rich RLK (RECEPTOR-like protein kinase) 8
    Curator Summary
    Encodes a cysteine-rich receptor-like protein kinase.
    Computational Description
    cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (CRK8); FUNCTIONS IN: kinase activity; INVOLVED IN: protein amino acid phosphorylation; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Reverse transcriptase, RNA-dependent DNA polymerase (InterPro:IPR013103), Serine/threonine-protein kinase domain (InterPro:IPR002290), Protein of unknown function DUF26 (InterPro:IPR002902), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635); BEST Arabidopsis thaliana protein match is: cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (TAIR:AT4G23140.1); Has 131284 Blast hits to 128961 proteins in 4748 species: Archae - 114; Bacteria - 13787; Metazoa - 45525; Fungi - 11866; Plants - 40839; Viruses - 427; Other Eukaryotes - 18726 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR