K38646

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38646

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38646

Determination of introduced cDNA(s)

  • J023010C06 - Rice Full-length cDNAs - Original: J023010C06

    full reading [+] show sequence

    Nucleotide sequence: J023010C06 - full reading
    GGGCGGCCTC CTCCTCTCCT CCTCCCCTGC ACAGACCACT CGTTTCCTCC 
    ACAAAGAGGG AGGGAACAAG GGAAGGGTGT CGCCCGCCCC CCACCCCGAT
    CTGCCTCCGC CGCTCCGCTC CTCCGCGCCT GCGAAATCTA CCAACGCTAA
    CTCAGCAAGA TGGGTGCCGG CGGCAGGATG ACGGAGAAGG AGCGGGAGGA
    GCAGCAGAAG CTGCTCGGCC GCGCCGGCAA TGGCGCGGCC GTGCAGCGGT
    CGCCGACGGA CAAGCCGCCG TTCACGCTGG GGCAGATCAA GAAGGCCATC
    CCGCCTCACT GCTTCCAGCG CTCGGTGATC AAGTCCTTCT CCTACGTGGT
    CCATGACCTC GTGATCGTCG CCGCGCTGCT CTACTTCGCG CTGGTCATGA
    TCCCCGTGCT GCCGAGCGGG ATGGAGTTCG CGGCATGGCC GCTCTACTGG
    ATCGCGCAGG GCTGCGTGCT CACCGGCGTG TGGGTCATCG CGCACGAGTG
    CGGCCACCAT GCCTTCTCCG ACTACTCGGT GCTCGACGAC ATCGTCGGCC
    TCGTGCTGCA CTCGTCGCTG CTCGTCCCCT ACTTCTCGTG GAAGTACAGC
    CACCGGCGCC ACCACTCCAA CACCGGGTCG CTGGAGCGCG ACGAGGTGTT
    CGTCCCGAAG CAGAAGTCGG CGATGGCGTG GTACACCCCG TACGTGTACC
    ACAACCCGAT CGGCCGGCTG GTGCACATCT TCGTGCAGCT CACCCTCGGG
    TGGCCGCTGT AACTGGCGTT CAACGTGTCC GGCCGCCCGT ACCCGCGCTT
    CGCGTGCCAC TTCGACCCCT ACGGCCCGAT CTACAACGAC CGGGAGCGCG
    TCCAGATCTT CATCTCCGAC GTCGGCGTCG TGTCCGCGGG GCTCGCCCTG
    TTCAAGCTGT CGTCGGCGTT CGGGTTCTGG TGGGTGGTGC GCGTCTACGG
    CGTGCCGCTG CTGATCGTGA ACGCGTGGCT GGTGCTCATC ACCTACCTGC
    AGCACACCCA CCCGGCGCTG CCGCACTACG ACTCGAGCGA GTGGGACTGG
    CTCCGCGGCG CGCTGGCCAC CGTGGACCGC GACTACGGCA TCCTCAACAA
    GGTGTTCCAC AACATCACGG ACACGCACGT CGCGCACCAC CTCTTCTCCA
    CCATGCCGCA CTACCACGCC ATGGAGGCCA CTAAGGCGAT CCGCCCCATC
    CTCGGCGAGT ACTACCAGTT CGACCCGACG CCCGTCGCCA AGGCGACATG
    GCGCGAGGCC AAGGAGTGCA TCTACGTCGA GCCTGAGGAC AACAAGGGCG
    TCTTCTGGTA CAACAACAAG TTCTAACTGC TGCTGCTGTG AAATCAGCAT
    CACACATCCA TAGCCAAGCA GCAAACAAAT TTGAAGAAGA AGATTACAAG
    GGAAGAGAAG ATAGTGTCTT CGGAAATCGT CGTAGCAAGT ATCCATCCAT
    CCATCCAACC CATGAACAAT CGTCTATCTA TCCATGCATC TATCTATGGT
    TAGTCTCTTT AGATAGGAGA GGGCACTTGG GCACAGAGGA AGGCTATTGC
    AGTGCCATTG CTAGAGTTGC CATCAAGTGC AAAGTAGGCG GATCAGGCGT
    GTGTCATGCC TGTGGATTTG TAGTCTATGT ATGTGTCAGC TGCTGAGCTC
    CGGTGTCGCA GCCTTGGTCC CTGTCGTGTT ATTTCCATCG TTTTTTTCCC

    Gene models with high sequence identity

    1. AT3G12120.2 [+] show detail - fatty acid desaturase 2
      E-value: 1e-160; Score: 563.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Fatty acid desaturase, type 1 0.000000000000003
    HMMPfam Protein of unknown function DUF3474 0.0000000000031
    HMMPfam Fatty acid desaturase, type 1 0.0000000000000035

    See the detailed result >

    AT3G12120.2

    Model type
    Protein coding
    Short Description
    fatty acid desaturase 2
    Curator Summary
    Major enzyme responsible for the synthesis of 18:2 fatty acids in the endoplasmic reticulum. Contains His-rich motifs, which contribute to the interaction with the electron donor cytochrome b5. Mutations in this gene suppress the low temperature-induced phenotype of Arabidopsis tocopherol-deficient mutant vte2.
    Computational Description
    fatty acid desaturase 2 (FAD2); FUNCTIONS IN: omega-6 fatty acid desaturase activity, delta12-fatty acid dehydrogenase activity; INVOLVED IN: oxidation reduction, lipid metabolic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3474 (InterPro:IPR021863), Fatty acid desaturase, type 1 (InterPro:IPR005804); BEST Arabidopsis thaliana protein match is: fatty acid desaturase 3 (TAIR:AT2G29980.1); Has 2431 Blast hits to 2431 proteins in 654 species: Archae - 0; Bacteria - 821; Metazoa - 31; Fungi - 266; Plants - 965; Viruses - 0; Other Eukaryotes - 348 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR