K38651

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38651

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38651

Determination of introduced cDNA(s)

J023072H19 - Rice Full-length cDNAs - Original: J023072H19

full reading [+] show sequence

GAAGGAGGTG AGATGAAGCC CTACCTTTTG ATTGGGATTT GCTCTTGAAT 
CTGCTTCCAA ACCATCGATT CATCATCCAT CTCTTCCAGT CTTCCTTCGC 
ATTCTCCTGG AAAAAAATCA GAAAAGAAAA AGGAAAAATC TCTTGTACTC 
TCCTCGATTC TGCAATTTTT GTTTGGTTGT CCCAACAAAA ATCCCCCAAT 
TCTCCCCAAG AACAGGAGCA CACGACCCTG TTCCTGTCCC CTAGATCTGC 
GTGGAGGCGG CGAGAAAACC TCAATCCGGC ACAAGGGGCT TGTGGTTGAT 
ACCCCGGAGC GCCGTCTAAT TCCAATCTTG GTAGCTGCCG GCGGTGCTTC 
CGGTGGTAGA CGAGGAGATG GTGCCGTGGG AAGGGTATGT GAGCGACGAG 
ACGATGGGGA CGTTCGCGCC CATCGCGCTG TACTGGGTGT ACGCCGGCGG 
CTACCAGCTG GTGCTGCACC GGCGGCCGCT GGAGCGGTAC AGGCTCCACA 
CGCGGGCGGA GGAGGAGGAG AAGAACCTCG TCGCCCTCCC CGCCGTCGTC 
CGCGGCGTGC TCCTGCAGCA GCTCGTGCAG GCCATCGTCG CCATGATCCT 
CTTCATGGTT ACTTCAGATA GTTCAGCAGT TGTAGTTCAG CCACCTATCA 
TCATTCAAGC TTTCCAGTTT TTGGTTGCAA TGCTTGTCAT GGATTCATGG 
CAGTATTTTG TGCACCGCTA CATGCACCAG AACAAATTCC TCTATCGGCA 
TATCCATTCA CAACATCATC GGCTGATAGT TCCCTACGCC ATTGGGGCTC 
TCTACAACCA TCCATTGGAG GGACTCCTTC TGGACACCGT GGGTGGTGCT 
ATCTCCTTCT TGGTCTCTGG CATGACACCA AGGACTTCCG TGTTCTTCTT 
CTGTTTTGCT GTCCTCAAGA CAGTTGATGA TCACTGTGGA CTTTGGTTAC 
CGTATAACAT CTTCCAGTCC TTGTTCCAAA ACAATACTGC CTATCATGAT 
GTCCACCATC AGCTTCAAGG CTCAAAGTAC AATTACTCTC AGCCTTTTTT 
CTCAATCTGG GACAGAATAC TGGGGACCCA CATGCCCTAC AACTTAGTAA 
GACGGAAGGA AGGCGGTTTT GAAGCAAGAC CACTGCGAGA CTAGCTTGAA 
CCGATGGAAG TGTATAGAAC TCCAGCAACT CAGTGAGATA CAATGCTCTA 
CCTCCCTTTC ATATGTTTAG AACCTCATAG GGACCAATCT AACTTCGAAG 
ATGTTGAAGC TGTTCAAGTA CTCCCAGATT TTCTTTTTCG CGTCTTGCTG 
GAAGCAATAC GCTAGTCGGG ATTTGGGAAG ACACTGAAGC TCTTGCGCGA 
TGCTTGTTCT TACACCTGCT GTTAATCTAG TTAGATCGGT CACCTGGAAT 
GTGTGTGGTA CTGTATGGTT TGTCTTGATG GCTTTTCTCC TTGTCATGGC 
TATTTTTTGT GCAGAGCTGG CATTTACATT GCTGTGCAGA TAGTGTATTT 
GGAATCACAC TTCTGTATGT ACCCCCAATT ATTTATGTAA CTGAATATCT 
GGGCATGGTT GGTAACTTCA AAGTTCAAAC CAATCTTTAT CT

Gene models with high sequence identity

AT1G69640.1 [+] show detail - sphingoid base hydroxylase 1
E-value: 1e-94; Score: 344.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Fatty acid hydroxylase	1.7e-20
HMMPanther	SUR2 HYDROXYLASE/DESATURASE	5.5e-123
HMMPanther	STEROL DESATURASE	5.5e-123

See the detailed result >

AT1G69640.1

Model type: Protein coding
Short Description: sphingoid base hydroxylase 1
Curator Summary: Encodes one of the two redundant sphingoid base hydroxylases (SBH). Involved in sphingolipid trihydroxy long-chain base (4-hydroxysphinganine) biosynthesis. Double mutants of SBHs were dwarfed and not able to progress from vegetative to reproductive growth.
Computational Description: sphingoid base hydroxylase 1 (SBH1); CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sphingoid base hydroxylase 2 (TAIR:AT1G14290.1); Has 2400 Blast hits to 2339 proteins in 395 species: Archae - 0; Bacteria - 406; Metazoa - 416; Fungi - 708; Plants - 429; Viruses - 3; Other Eukaryotes - 438 (source: NCBI BLink).
Link: InterPro Scan - TAIR