K38707

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38707

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38707

Determination of introduced cDNA(s)

  • J013052O14 - Rice Full-length cDNAs - Original: J013052O14

    full reading [+] show sequence

    Nucleotide sequence: J013052O14 - full reading 
    GACTTCAGTT CCACAAGCTC CTTTGCACTC TACCAAATCC AGCCATGGCA 
    GCCAAGGCCC CTCTCGTGCT GCGCCTCTGT CTCTTCCTCT GCATCTCCCT 
    CTCCCTCTTG CTGTTATCAT CTCCTCAACG GGTGACGAGC TTGAGCCTCG 
    ATGCCGATGT GGACGATCAC TACTACCATT ACGATGGGGA CGAAGACGAT 
    GACAACTACT ACCATGATGA CGACGACGAC GTCTTCTCCG GCAGGCCGGT 
    ACGGAGAATA TACGACGGCG ACGACGACGA AAACTACTAC CGCAATGATG 
    AAGTAGACTT CTCCAGCAGG CCGGCTCGGA GGCTATACGA CGGCGGCGCA 
    GTCATGCCGG AGAAGTACAA CGTCCTGAAC GGCAACTCCT CCAACAGCAG 
    CTCCGGCTCG GCCTTTTGCA GGTTGCTTTC TCTCCAGATC CTGGACCTGT 
    CAAACAACAA GCTCACCGGT AAGCTGCCTG ACTGCTGGTG GAATCTGCAG 
    AGCCTGCAGT TCATGGACCT CTCCCACAAC CGCTTCTCAG GTGAAATCCC 
    TGCAGTCAAT ACAAGCTACA ATTGTTCTCT TGAATCGGTT CATCTTGCCG 
    GCAACGGCTT CACCGGTGTT TTTCCATCAG CGCTAAAGGG ATGCCAGACG 
    CTGGTCACTT TAGATATTGG GAACAACAAT TTCTTTGGTG GCATTCCTCC 
    TTGGATTGGG AAAGGCCTTT CATCTTTGAA GATTCTTAGC CTTAGATCAA 
    ACAACTTCAC CGGTGAAATT CCTTCTGAGT TATCACATCT TTCTCAACTC 
    CAACTGCTAG ATATGACCAA CAACAGTTTG ACAGGGTCGA TTCCCACATC 
    TTTTGGCAAC TTAACATCCA TGAAGAATCC AAAAATTGTA TCCAGTGCGG 
    GATCATTAGA TGGGTCTACC TATCAGGATA GAATCGATAT AATCTGGAAG 
    GGGCAGGAGA TAATTTTCCA AAAAACACTT CAATTAATGA CGGGTATTGA 
    TTTGTCAGGT AACTCATTGT CTGAATGCAT CCCCGATGAG TTAACAAACC 
    TCCAAGGCCT TCGATTTCTG AACTTGTCAA GGAACAATCT ATCGTGTGGG 
    ATACCTGAAA ACATAGGTAG TTTGAAAAAT CTTGAGTCCC TTGACCTCTC 
    GTCAAATGAA ATTTCAGGAG CCATTCCTCC AAGCCTTGCT GGTATATCTA 
    CCCTTAGCAC TCTTAATCTC TCGTATAATC ATCTATCAGG CAAGATACCC 
    ACCGGGAATC AACTTCAAAC CTTCACTGAC CCATCAATAT ACAGCCATAA 
    TTCAGGGCTC TGTGGCCCTC CGTTGAACAT TTCATGCACA AATGCTTCAG 
    TTGCGTCAGA TGAGAGAGAC TGTAGAACAT GCGAGGACCA GTATTTCTAC 
    TACTGTGTAA TGGCTGGAGT GGTTTTCGGT TTTTGGCTAT GGTTTGGAAT 
    GCTCCTTTCC ATCGGAACCT GGAGGTATGC CATTTTCGGT TTTGTTGATG 
    GCATGCAATG TAAAGTTATG CAGAAAGTCT CCTCTGTTGA TAAATTTCTT 
    TCAAGAGGAA ATACTGATCA GTATTTGTAG CTGTGTGTTT TCTTTCTGTA 
    CCATCTGAAG ATGTAGCATG GTTAGTTTTG TCAGTGTTCT GTAATTGGCA 
    GGAGTCATAG GACCCCCAAC AAACTTCCTT TGTATCAAGA CTAAGATGTA 
    AGAAGTTACT GCATCCATCC AAAATTATAT GGAACATGTC CATCTTATAT 
    ACTACCAACA AATGCTGCTA TGCTTGGATA TTCATT

    Gene models with high sequence identity

    1. AT2G34930.1 [+] show detail - disease resistance family protein / LRR family protein
      E-value: 1e-41; Score: 168.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily L domain-like 9.8e-68
    ProfileScan Semaphorin/CD100 antigen 9.486
    HMMSmart no description 140
    HMMSmart Leucine-rich repeat, typical subtype 9.9
    HMMSmart Leucine-rich repeat, typical subtype 260
    HMMSmart no description 300
    HMMSmart Leucine-rich repeat, typical subtype 100
    HMMSmart no description 170
    HMMSmart Leucine-rich repeat, typical subtype 40
    HMMSmart Leucine-rich repeat, typical subtype 100
    HMMSmart no description 2.3
    HMMSmart Leucine-rich repeat, typical subtype 16
    HMMPfam Leucine-rich repeat 0.0049
    HMMPfam Leucine-rich repeat 0.48
    HMMPfam Leucine-rich repeat 0.023
    HMMPfam Leucine-rich repeat 0.024
    HMMPfam Leucine-rich repeat 0.34
    HMMPfam Leucine-rich repeat 0.035
    HMMPfam Leucine-rich repeat 0.029
    HMMPfam Leucine-rich repeat 0.68
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 7e-89
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 7e-89
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2e-06
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2e-06
    Gene3D no description 2.1e-11
    Gene3D no description 7.7e-54

    See the detailed result >

    AT2G34930.1

    Model type
    Protein coding
    Short Description
    disease resistance family protein / LRR family protein
    Computational Description
    disease resistance family protein / LRR family protein; INVOLVED IN: signal transduction, defense response to fungus, defense response; LOCATED IN: cell wall; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: Leucine-rich repeat transmembrane protein kinase (TAIR:AT4G20140.1); Has 135121 Blast hits to 32840 proteins in 1181 species: Archae - 56; Bacteria - 8201; Metazoa - 34800; Fungi - 1569; Plants - 79859; Viruses - 2; Other Eukaryotes - 10634 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR