K38708

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38708

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38708

Determination of introduced cDNA(s)

  • J023088P13 - Rice Full-length cDNAs - Original: J023088P13

    full reading [+] show sequence

    Nucleotide sequence: J023088P13 - full reading
    GGCCTACAGG CGCAGGAAGA GGAGGAGAAG AAGCGGAAGA GGAGAGAAAA 
    AAAAAATTCG CAGCAAAAAA GAAAAAAAAA TCGCAGCTGC AAGGTAGAGG
    AGGAGAAGTT GGGGTTTGGG AGGGCCAGCG ATTGAGCCGA CGAACTCAAG
    GTTCTTCAAA GTGATGATTG GGATCGAACC CTGGTAACCT CCATGTCTGG
    GGCGCCATGC TCCAACCTTG GACTTGTTCC CAGGGATATG CATGGTAGTA
    TCCCTATTAG CACTACAAAT TCCTCTGGGC CAAGCATTGG TGTTAGCTCT
    TTGGTGACGG ATGCTAACTC ATCGCTCTCC GGAGGTGCCC AGTTGCAGCC
    AATTATTGAT GGTCCCATTG TGCAACAAAG TCCTCCCCAA GAGCAGATGC
    AGAAGCGAAG GTCTTCTAGT GTAACATCAC AACCTGTTAT TGATGCTGCT
    GGTGCATTGC ATGCTCAGAA GAAGTCAAGG GTTGATATTA GGCAAGATGA
    TATCCTGCAA CACAATTTAA TCCAGCAACT GCTCCAAGGC CAGAGTTCTC
    TTCATCTGCA GGGTCAACAG AACCCTCAGA TTCAAGCCTT GATCCATCAG
    CATAAACTGG CACAGATTCA GCAGCAACAG CAGCATCAGA TGTTGCAACC
    ATTTTCACAG ATCCAACAAT CTCAAGTTGG CATACCTCGG CAGCCACAGT
    TGAGGCCTCC ACTAGCGCAG CCTGGAATGC AGCTAGCTGG ACCTGTTAGG
    ACTCCTGTCG AGAATGGGCT TTGTTCTCGA AGGTTAAAGC AATACTTATA
    CCATAAGCGT CACCGACCAG AGAATAATCC AATAACATAC TGGAGGAAGC
    TTATTGATGA ATATTTTGCA CCACGAGCAA GAGAAAGATG GTGTGTATCC
    TCGTATGAGA AAAGAGGAAA TCCTTCAGGT GCTGTTCCAC ACACAGCTCC
    GGATTCATGG CGCTGTGACA TTTGTAATAC ACATGGGGGC AAAGGATATG
    AGGCTACCTA TGAAATACTT CCTAGACTCT GTCAAATTAG ATTTGACCAT
    GGTGTTATAG ATGAATACTT ATTCCTTGAC ATGGCCAATG AATTCCGGTT
    GCCCAATGGA CTAATGCTGC TGGAACATAC TAAAGTTGTT CAGAAAAGCA
    TTTATGAACA TATGCATGTG ATACACGAGG GGCAGTTGAG AATCATATTC
    ACACCAGAAC TGAAGATAAT GTCCTGGGAG TTCTGTTCAC GGCGACATGA
    TGAGTATATC ACTCGCAGGT TTCTTTCACC CCAGGTTGCT CATCTGCTGC
    AAGTTGCCCA GAAATATCAA ACTGTTGCCA CTGAAAGTGG TCCAGCTGGG
    GTCTCAAACA GTGATGCACA GAACATTTGC AACATGTTTG TGACGGCGTC
    ACGACAGCTA GCGAAAAATA TAGACCACCA CACCTTAAAT GAGCATGGTC
    TATCTAAAAG ATATGTTCGC TGCTTGCAGA TATCAGAGGT GGTGAATCAC
    ATGAAAGACC TGATTGAATT CAGCCACAAG AACAAGCTTG GTCCTATAGA
    GGGTCTGAAG AGCTATCCCA AGCAAACTGC AGCAAAACTT CCAGTACAAA
    ACATGCACGA GCCAAAGCAA CTAATGGCAG CTGCTGGCCT TCCTAATGAC
    CAGACTAACC TCAAAGCCAT GGGTGTCAAA ACAGAAATGA ACACCCATGC
    GAATGAGACG CACGGTATTG GACCAATTGG AAATGGTCCG CAGAATGCTG
    CTGCACTTAA CAATTACCAG AATCCCATTG GAAATGGTCT GCAGAATGCT
    GCTGCACTTA ACAATTACCA GAATATCCTT AGAAGTTCAG TCGCAAACCA
    GAGTTTGCTT CAGCAGGAGG CATCAAGCAT GTTTAAAGGT CCCACAGCAA
    TGCACAATGG CATTCAGCTG GAAGCATCTA GATCCTTCCG TGGACCAAAC
    CAGGTGCATC TCGCGCAGTT CCAACATCCG GCCTCATTTC AGCAGCCTAT
    GCCTCAGCAG AGCAGCCTCC AGGGCTTGGG TGTGAGCCCA CAATATCAGC
    AGCATGTGCT CCATCAGTTG CTGCAAGAGG CCAAGAACAC TAACAACCGT
    GTCTTGGCGC AGCAGCAGCA GCAACAACAA CTTCAACATG CTCCTGCTAA
    CAGTGGTCTT GCATCAGGAG GAACGGCTAT CACCGGCAGC GCCGCTAGCG
    GGGATCATAT GAATAACAAC GGCGCGGTGA AGGGTGGGAC TCCAATGGTT
    ACAACAGGTC CTAGCAGTGT GATCAACAAT ACAGCCAGCA TCCTCCCCAG
    CAGAAGTAAC AGCTTCAAGT CAGTGAGCAG CAACCCCCAA GTTGCAGCTG
    CTGCGGGCGG CGGCATTGGC AGCGGCGGCC ATGCGGCTAC CCCCAAGGCT
    GATGCTCTGC ATGAGTTGGA TGATCTTGAC AATCTTGGGA ATCTGATCAG
    TACTGAACTG GAGGAGAGTG GGCTGTTCCT GGGTGACCAG GCAGGTGGTG
    GCTACTCATG GAACATGTGA CAAATGCTTG CCTGCTTGGC TTCTTGGTGA
    TGATGGAAAC TGCCGTAGAT TCTAGCTTCT CGTCTTGTTC TTTTTTGTTT
    TGGGTATGTG GAGTTTTTGT TTGGGGTGTC TGAAACAGTT TCTGATGATG
    ATGATACACT GATGTAATTT AAGCGTTATG TGCGCTGGTA AGTGAGTTGG
    CTTGGAATGC TGAGATCGAA CCAGAGCTGC TTCTGCTAGC ACACATCGAG
    GCCCATCATA CTGCTGAATG ACAACGTCTG GCGATTACTA TTATTTACTT
    TAGTGGTAGT ACTATTATTT TAATTTTTGT ATCTTTATAA TGCCATATGA
    TTGTCGATTC AGCGAAGAAA TTTTTATAGT AGGATTTACT CCAAAATCCT
    GGAATGGAAG GATTTTGCAC GAGTTTTCTG GGATTTGAAA TAGTTCCTGA
    AAGAAAAAAC CCGCCTGTAA TCTGCTGTAT ACAGAGTTTT TGATTTTCGA
    CTATGTTTAA TTCAGGTCAG GTTGGAAGGG TTTTATTCC

    Gene models with high sequence identity

    1. AT5G62090.2 [+] show detail - SEUSS-like 2
      E-value: 2e-98; Score: 357.00

     

    InterPro Scan Digest

    See the detailed result >

    AT5G62090.2

    Model type
    Protein coding
    Short Description
    SEUSS-like 2
    Computational Description
    SEUSS-like 2 (SLK2); BEST Arabidopsis thaliana protein match is: SEUSS-like 1 (TAIR:AT4G25520.1); Has 38958 Blast hits to 16422 proteins in 905 species: Archae - 6; Bacteria - 1880; Metazoa - 14538; Fungi - 4050; Plants - 2632; Viruses - 363; Other Eukaryotes - 15489 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR