K38721

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38721

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38721

Determination of introduced cDNA(s)

  • J033069K07 - Rice Full-length cDNAs - Original: J033069K07

    full reading [+] show sequence

    Nucleotide sequence: J033069K07 - full reading
    GACGAATTCC CAATAAAGAA ATAGGCAAAA TTCCCCATCT CCTCGTCTCC 
    TCCCAACTCC AAACCCTAGC TCCCACCCCC TCTCGCCGTC GCCGTCGCGT
    CCCATGGCGA AGTCGCGGCC GCCCAAGCGG ATCCTCGAGT CCTACACCAT
    CAAGGGCTCC GACAAAGTCA TCAAGCCTGG GGACTGTGTG CTAATGAGGG
    CATCTGATAC ATCAAAGCCA CCCTATGTGG CAAGAGTTGA GGCTATTGAG
    GCTGCAGGGT CACGAGGCAC AAATGTGAGA GTACGGGTGC GGTGGTACTA
    TCGGCCAGAG GAGTCCATGG GTGGAAGGCG TCCATTTCAT GGTGCCAAAG
    AGGTGTTCCT CTCGGATCAC TATGACGTAC AGAGTGCTGA CACCATAGAG
    GGAAAGTGCA ACGTTCACAG CTTCCGTAGC TACACAAAGC TTGATTCTGT
    CAATGCTGAG GACTTCTTCT GTCGCTTTGA GTACAAATCA GCCACAGGAA
    GCTTCGTGCC CGACCGCATT GCTGTGTTCT GCAAGTGTGA GATGCCATAC
    AATCCTGATG ACCTTATGAT CCAATGTGAG GAATGCTCTG ATTGGTTTCA
    CCCTTCTTGT ATTGGAATGA CTATTAAAGA TGCAAAAAAA CTAGAGCATT
    TTTTCTGCCA GAGCTGTACT GCGGAAAATG GAAAGATGGC TGAGGATTCT
    CATGAAGCTA CAGCGCAATC CGAAGAAAAG CAGGTGGAGT CAAAAAGACG
    GAGAAGGTGA CTGCCCCCCA GATTCATTGA CGAGATACAC CTGGATGTAC
    AAAGCCTTCT CAAGTTGGTG TAATGCTATT TATTTGTCAT GGCAAGTGTG
    TGTGACCCAC GACCACGAGA GTCCCTTCCT GTAATGTCAG TCGCATGGTG
    TACATAAACT TTTCGACCTG AGACTGTTGT ATTAGGAGAC GACACGACCT
    GTTGTTGTTG CATGATGTTT TTAGCAGCGT CAGAATTAGC ATGGTAGAGT
    CGGGTGATGA AGCCCCTCGC GGGCATTAGG ACTCCCGTAT GGATGTTATC
    ACTGATCATA CATTGATACT ACATTGGATG CAGTTGAGTC TGTCATCTGC
    GTTTGTCTTT GGAGAATTCT TGTACCATCA ATCCATCATG TGAACTTTGA
    TTCT

    Gene models with high sequence identity

    1. AT4G22140.2 [+] show detail - PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
      E-value: 6e-84; Score: 308.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, PHD-type, conserved site 0
    HMMSmart Bromo adjacent homology (BAH) domain 4.8e-38
    HMMSmart Zinc finger, PHD-type 0.0000000067
    ProfileScan Zinc finger, PHD-finger 9.241
    ProfileScan Bromo adjacent homology (BAH) domain 23.212
    HMMPanther PHD FINGER TRANSCRIPTION FACTOR 7.1e-31
    Gene3D no description 4.8e-16
    superfamily Zinc finger, FYVE/PHD-type 0.0000000000086
    HMMPfam Bromo adjacent homology (BAH) domain 7.8e-24
    HMMPfam Zinc finger, PHD-finger 0.000000000092

    See the detailed result >

    AT4G22140.2

    Model type
    Protein coding
    Short Description
    PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
    Computational Description
    EARLY BOLTING IN SHORT DAYS (EBS); FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: positive regulation of flower development, regulation of transcription, DNA-dependent, seed germination; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Bromo adjacent homology (BAH) domain (InterPro:IPR001025), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: Bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT4G04260.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR