K38734

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38734

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38734

Determination of introduced cDNA(s)

  • J013151N10 - Rice Full-length cDNAs - Original: J013151N10

    full reading [+] show sequence

    Nucleotide sequence: J013151N10 - full reading
    GATTTTCCAA ATATTTCGAT CCGCAGCGTA ATCTCTCTCG CGTGCGCCGG 
    TGCGCGATCC CCTCCCTCCC TCCTCCTCAA TCCCCCAGAT CGCGTGCGCC
    GCGGGCTCTC CCCGCGTTGA CTCTCCAGCA TCTAGATCCG CGCCTGCGCT
    CCCGACGAGG TCGGCCGGTC TACGGTCACC CTCGTGGTTT CCATTGACTT
    GTTTTTCTCT TCTTTTTCTT TTTTTCCCCT CTTCTCCCCA ACCTCGCAAC
    AAAATCGGCG GCTATCCTCG TGTTTCTTCT TCGCTCCGTG GCCGCAGAAT
    CCCCCCACCG CTGTTCTTGC GGCGCCGGTG TTCGTTTGAA AGCAGTTGGC
    TGCGCTGTCC TGGGAGGCCT CAGCAGCAGC AGCAGCGAGC TTTGCTCTTG
    TGAGCGCTTC GTGTGCTTGC AGCTGCGTTT TATTATTGCG TCTTGGAGCT
    GTCACGACGT GGTTGTTGAG AGGAATCTAT CATCCCTTCA CAGTTGCGAG
    GAAAGCTTCC TGTGATGTCT AATCTATCAG AGCCCTCAAA AGAAGCTGCA
    TCAGCTGATG ATTCAAGTGC TGTCCAGAAA ACTGGAGCAT GGAGTAACAC
    GTTGAACATT CTTCTGCAAC AAGCTTCAGT CTATGGTGTG GCTGCTGGTT
    ATTGCCTGTC AGCATCCCTG CTCTCCATTA TCAACAAATG GGCAGTCATG
    AAATTTCCAT ACCCTGGAGC ATTGACAGCT TTACAGTACT TCACTAGTGT
    TGTTGGAGTT CTCTTATGTG GACAACTAAA GCTTATTGAG CATGATGGCC
    TTAATTTGAG GACCATGTGG AAGTTCTTGC CTGCTGCGGT GATGTTCTAC
    ATCTCCATCT TCACAAACAG TGAACTTCTA CTCCATGCCA ATGTGGACAC
    TTTCATCGTG TTTCGCTCAG CTGTGCCAAT TTTTGTGGCC ATTGGAGAGA
    CCCTTTATCT TCACCAACCA TGGCCATCAC TCAAGACATG GCTTTCACTT
    TCAACTATAC TTGGTGGAAG TGTGATCTAT GTTTTCACAG ACAACCAGTT
    CACTGTGACT GCTTACACCT GGGCAGTGGC ATATCTTGCA AGCATGTCCA
    TTGACTTTGT CTACATCAAG CACGTTGTCA TGACCATTGG CCTGAACACA
    TGGGGCCTTG TGCTTTACAA CAATCTGGAG GCTTTGATGC TCTTCCCTCT
    TGAGATGCTT CTAATGGGGG AGCTTAATCA GATGAAGGGC GACAGCGCTA
    AAGTGACAAA CTGGCTTTCA TCTGATGTCA TTCTTCCTGT TGCTCTGTCT
    TGCTTGTTCG GGCTATCTAT ATCCTTCTTC GGGTTCTCCT GCAGACGGGC
    TATCTCGGCA ACTGGATTTA CCGTGCTCGG TATAGTGAAC AAGCTCCTGA
    CTGTTGTGAT TAATCTCCTT ATCTGGGACA AGCATGCCTC CTTTGTGGGA
    ACAATTGGGC TCTTGATCTG CATGTCCGGT GGTGTTCTCT ACCAGCAATC
    CACCACAAAA CCAAAGGCCC CCAAGGCTGA GCCAAAAGAG GAGAATGATG
    AGGAGCAGCA GAAATTGCTG GAGATGCAGC AAGGGCTCGA AAGTAGCTCA
    ACTCAGAAGC AAGCGTCATC TTAAGCCTGG TAGGAAATTT GGCGTCGATA
    TCTTACTCTC AACCTCAAGA CGGCTTCCCT GTATCATATT ATGGGATGCT
    AAAGAAGAAT CATTTGGCCA AAGGATGTTT GTTCGTCATG CTAGAATCCT
    GTAATGCTGT TGGCATGAAA AATCTCAGAG AAAACTTAAT GTCACTTTAA
    AATTCTTTGT TTAGTGGTAT ACCGTAATTC ATTTGTT

    Gene models with high sequence identity

    1. AT1G76340.1 [+] show detail - golgi nucleotide sugar transporter 3
      E-value: 1e-133; Score: 473.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Multidrug resistance efflux transporter EmrE 0.00081
    superfamily Multidrug resistance efflux transporter EmrE 0.011
    HMMPfam Protein of unknown function DUF250 1.9e-06
    HMMPanther SOLUTE CARRIER FAMILY 35 1.5e-52

    See the detailed result >

    AT1G76340.1

    Model type
    Protein coding
    Short Description
    golgi nucleotide sugar transporter 3
    Curator Summary
    Encodes a nucleotide-sugar transporter.
    Computational Description
    golgi nucleotide sugar transporter 3 (GONST3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 4 (TAIR:AT5G19980.1); Has 1377 Blast hits to 1372 proteins in 233 species: Archae - 0; Bacteria - 8; Metazoa - 324; Fungi - 246; Plants - 675; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR