K38734

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38734

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38734

Determination of introduced cDNA(s)

  • J013151N10 - Rice Full-length cDNAs - Original: J013151N10

    full reading [+] show sequence

    Nucleotide sequence: J013151N10 - full reading 
    GATTTTCCAA ATATTTCGAT CCGCAGCGTA ATCTCTCTCG CGTGCGCCGG 
    TGCGCGATCC CCTCCCTCCC TCCTCCTCAA TCCCCCAGAT CGCGTGCGCC 
    GCGGGCTCTC CCCGCGTTGA CTCTCCAGCA TCTAGATCCG CGCCTGCGCT 
    CCCGACGAGG TCGGCCGGTC TACGGTCACC CTCGTGGTTT CCATTGACTT 
    GTTTTTCTCT TCTTTTTCTT TTTTTCCCCT CTTCTCCCCA ACCTCGCAAC 
    AAAATCGGCG GCTATCCTCG TGTTTCTTCT TCGCTCCGTG GCCGCAGAAT 
    CCCCCCACCG CTGTTCTTGC GGCGCCGGTG TTCGTTTGAA AGCAGTTGGC 
    TGCGCTGTCC TGGGAGGCCT CAGCAGCAGC AGCAGCGAGC TTTGCTCTTG 
    TGAGCGCTTC GTGTGCTTGC AGCTGCGTTT TATTATTGCG TCTTGGAGCT 
    GTCACGACGT GGTTGTTGAG AGGAATCTAT CATCCCTTCA CAGTTGCGAG 
    GAAAGCTTCC TGTGATGTCT AATCTATCAG AGCCCTCAAA AGAAGCTGCA 
    TCAGCTGATG ATTCAAGTGC TGTCCAGAAA ACTGGAGCAT GGAGTAACAC 
    GTTGAACATT CTTCTGCAAC AAGCTTCAGT CTATGGTGTG GCTGCTGGTT 
    ATTGCCTGTC AGCATCCCTG CTCTCCATTA TCAACAAATG GGCAGTCATG 
    AAATTTCCAT ACCCTGGAGC ATTGACAGCT TTACAGTACT TCACTAGTGT 
    TGTTGGAGTT CTCTTATGTG GACAACTAAA GCTTATTGAG CATGATGGCC 
    TTAATTTGAG GACCATGTGG AAGTTCTTGC CTGCTGCGGT GATGTTCTAC 
    ATCTCCATCT TCACAAACAG TGAACTTCTA CTCCATGCCA ATGTGGACAC 
    TTTCATCGTG TTTCGCTCAG CTGTGCCAAT TTTTGTGGCC ATTGGAGAGA 
    CCCTTTATCT TCACCAACCA TGGCCATCAC TCAAGACATG GCTTTCACTT 
    TCAACTATAC TTGGTGGAAG TGTGATCTAT GTTTTCACAG ACAACCAGTT 
    CACTGTGACT GCTTACACCT GGGCAGTGGC ATATCTTGCA AGCATGTCCA 
    TTGACTTTGT CTACATCAAG CACGTTGTCA TGACCATTGG CCTGAACACA 
    TGGGGCCTTG TGCTTTACAA CAATCTGGAG GCTTTGATGC TCTTCCCTCT 
    TGAGATGCTT CTAATGGGGG AGCTTAATCA GATGAAGGGC GACAGCGCTA 
    AAGTGACAAA CTGGCTTTCA TCTGATGTCA TTCTTCCTGT TGCTCTGTCT 
    TGCTTGTTCG GGCTATCTAT ATCCTTCTTC GGGTTCTCCT GCAGACGGGC 
    TATCTCGGCA ACTGGATTTA CCGTGCTCGG TATAGTGAAC AAGCTCCTGA 
    CTGTTGTGAT TAATCTCCTT ATCTGGGACA AGCATGCCTC CTTTGTGGGA 
    ACAATTGGGC TCTTGATCTG CATGTCCGGT GGTGTTCTCT ACCAGCAATC 
    CACCACAAAA CCAAAGGCCC CCAAGGCTGA GCCAAAAGAG GAGAATGATG 
    AGGAGCAGCA GAAATTGCTG GAGATGCAGC AAGGGCTCGA AAGTAGCTCA 
    ACTCAGAAGC AAGCGTCATC TTAAGCCTGG TAGGAAATTT GGCGTCGATA 
    TCTTACTCTC AACCTCAAGA CGGCTTCCCT GTATCATATT ATGGGATGCT 
    AAAGAAGAAT CATTTGGCCA AAGGATGTTT GTTCGTCATG CTAGAATCCT 
    GTAATGCTGT TGGCATGAAA AATCTCAGAG AAAACTTAAT GTCACTTTAA 
    AATTCTTTGT TTAGTGGTAT ACCGTAATTC ATTTGTT

    Gene models with high sequence identity

    1. AT1G76340.1 [+] show detail - golgi nucleotide sugar transporter 3
      E-value: 1e-133; Score: 473.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Multidrug resistance efflux transporter EmrE 0.00081
    superfamily Multidrug resistance efflux transporter EmrE 0.011
    HMMPfam Protein of unknown function DUF250 0.0000019
    HMMPanther SOLUTE CARRIER FAMILY 35 1.5e-52

    See the detailed result >

    AT1G76340.1

    Model type
    Protein coding
    Short Description
    golgi nucleotide sugar transporter 3
    Curator Summary
    Encodes a nucleotide-sugar transporter.
    Computational Description
    golgi nucleotide sugar transporter 3 (GONST3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853); BEST Arabidopsis thaliana protein match is: golgi nucleotide sugar transporter 4 (TAIR:AT5G19980.1); Has 1377 Blast hits to 1372 proteins in 233 species: Archae - 0; Bacteria - 8; Metazoa - 324; Fungi - 246; Plants - 675; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR