K38808

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38808

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38808

Determination of introduced cDNA(s)

  • J013082P03 - Rice Full-length cDNAs - Original: J013082P03

    full reading [+] show sequence

    Nucleotide sequence: J013082P03 - full reading 
    GATGCGCGCC ATTTCGGCTC TTCTCCTCCG TCCCCTTCCT CCGCTGGATT 
    CCTCCATGGC TTCCTCTTCC CTCCCTTCTA GAACCTTCTA CCGCCACTCG 
    CTTCCCTCCT CCGCACCTCC ACCTCCTTCG AGAGGGGCCT GCGCCGCCGC 
    ATGCTGCTGC CTCCGCGCGG CCGTCTCCCG GCGGCGGGCA GCCGCGCAGC 
    TGCTCTCCGC CGCCGGATTC TTGATCGCCG TCTCGCCGCC TTCGCTAGCC 
    GCGCGGAGGG GCCGCATGGT CGTGTCGCTG GAGGACTACG TCACTTCACC 
    TGATGGCCTG AAGTACTATG ATCTTGTTGA AGGGAAGGGT CCAACTGCTG 
    AAAAGGGCTC AACTGTGCAG GTCCATTTTG ATTGCATATA CCGTGGCATC 
    ACCGCTGTGT CAAGCCGCGA AGCCAAACTA CTGGCAGGGA ACCGGAGTAT 
    TGCGCAGCCT TATGAGTTCA GTGTCGGATC GCTGCCCGGG AAAGAGCGAA 
    AGCGGGAATT TGTAGACAGT GCCAATGGGT TATACTCAGC ACAGGCGTCA 
    CCGAAACCTC CTGCCGCAAT GTACACAATA ACTGAAGGGA TGAAAGTGGG 
    GGGAAAGAGG AGAGTAATTG TCCCTCCAGA GCTCGGATAT GGGAAAAAGG 
    GGATGAATGA GATACCGCCT GATGCTCCTT TTGAACTCGA TATAGAGCTT 
    TTGGAAGTTG TCCCTCCTGC AGAGAAATGA CCATTTTTGT TTGCAATGGA 
    TGGGGAACTT TCATGAGATA TGTAACCAAA TATGTTCATA TGATATTTTG 
    CCGGGACATG ACTTGTTTGC CCACTCACAA GGAGAAAATA GAACAAGAAG 
    CAAAGTCAAG TAGGTAAAAG ACATGTACTA ATTTTGTTAT TCCTTATGCC 
    GAAGCAATAT TGGATCAAAA ATATTCTCCA CAATGTCGTG GAGCTTGATT 
    GATTATATGG AATGGTGATA TGATCTCTCT TTGCG

    Gene models with high sequence identity

    1. AT1G20810.1 [+] show detail - FKBP-like peptidyl-prolyl cis-trans isomerase family protein
      E-value: 1e-67; Score: 253.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF54534 1.6e-22
    Gene3D G3DSA:3.10.50.40 4.89999951782382e-16
    HMMPanther PTHR10516:SF29 1e-09
    ProfileScan Peptidyl-prolyl cis-trans isomerase, FKBP-type 0
    HMMPfam Peptidyl-prolyl cis-trans isomerase, FKBP-type 1.6e-20
    HMMPanther Peptidyl-prolyl cis-trans isomerase, FKBP-type 1e-09

    See the detailed result >

    AT1G20810.1

    Model type
    Protein coding
    Short Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein
    Computational Description
    FKBP-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: FK506 binding, peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; LOCATED IN: thylakoid lumen, chloroplast thylakoid lumen, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-prolyl cis-trans isomerase, FKBP-type (InterPro:IPR001179); BEST Arabidopsis thaliana protein match is: FKBP-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G10060.1); Has 1763 Blast hits to 1744 proteins in 606 species: Archae - 0; Bacteria - 1027; Metazoa - 95; Fungi - 57; Plants - 263; Viruses - 0; Other Eukaryotes - 321 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR