K38811

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38811

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38811

Determination of introduced cDNA(s)

  • J023110G13 - Rice Full-length cDNAs - Original: J023110G13

    full reading [+] show sequence

    Nucleotide sequence: J023110G13 - full reading 
    GGTTTTGTCT GAATTTCTGA ATGCAGCTGA GGCAGAAATC GGTGAGAGTG 
    GTAGGTGTTT GTTGCGATCG TTGAAGCATG AAGAGCAGCA GCCAAGAAGC 
    GGGAGAGGAG GTGTCCGAGA TCAGCAGCCA GGCGGCGTCC AACAACAACG 
    AGACGTGCAA CTCCTCCTCC GGCAAGGTCA GCCTCGACCT GTCGCTCACC 
    GTCGCCGCCG CCGCCGCGGC GGCTGCCTCC GCCACCGAGT CGAGCACCAC 
    GGACAGCGGC GGCACGCGGC CGGCGGCGAC GGCGACGGCG ACGGCGCGCG 
    AGCCGGCGCG GGTGTTCACG TGCAACTACT GCCAGAGGAA GTTCTTCAGC 
    TCGCAGGCGC TGGGCGGGCA CCAGAACGCG CACCGGCGGG AGCGCACGCT 
    GGCCCGGCGC GCCGTGCGGC TCGACGCGTT CCCCTACGGC TACGCCGACG 
    TGGCCTCGCT GCCGCTGTAC GGCGCCGGCC TGTACCCCAT CGGCATCCAG 
    GCGCACGCGT CGGTGCACCA CCACCACCCT GGCGTGGCGG CGCCGGCGGG 
    GCGCGCCGAG TTGAGGTCGG CGCGCGCGCT GCTCGGCCCG ATGCCGTTCT 
    TCGTGCAGGC GGCAGGCGAT GAGGATGCCA GCTTCGGGTG GCCGGGCAGC 
    TTCAGGCCAC CGCCCACCGC CGCCACCACC ATCCCCGCCG CCGCCGCCGC 
    CCCGGTCGCC GTCAACTCCG GCTCCTCCAA CTCCAACCAC GGCGGCAGCG 
    TCGTCGTGCA GGCCGCCGCC GACGAGCCCG ACCTCACACT TAGACTCTAG 
    CTGTCCCATC CATCCATCCA TTAGTCTGGT GTAACATTCA TCAGGTTGCT 
    CCTGATCATC TCCTCCGTTT GTGAGTAGAA TTCTTGCTTG CTTGCTTGCT 
    TCGCTCTCGA TCCTGCTGCT TGAGCTTGAC ATCAACCAAC CTGCTAGTAA 
    ATTACTATTG CTTCAAATGC ATGCGTGGAA GTATTGTTTT TGT

    Gene models with high sequence identity

    1. AT1G66140.1 [+] show detail - zinc finger protein 4
      E-value: 0.0000003; Score: 53.10

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, C2H2-type 0
    ProfileScan Zinc finger, C2H2-type 11.323
    superfamily C2H2 and C2HC zinc fingers 0.0000013

    See the detailed result >

    AT1G66140.1

    Model type
    Protein coding
    Short Description
    zinc finger protein 4
    Curator Summary
    Encodes a zinc finger protein containing only a single zinc finger.
    Computational Description
    zinc finger protein 4 (ZFP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 7 (TAIR:AT1G24625.1); Has 1119 Blast hits to 1118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 1103; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR