K38821

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38821

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38821

Determination of introduced cDNA(s)

  • J033092H08 - Rice Full-length cDNAs - Original: J033092H08

    full reading [+] show sequence

    Nucleotide sequence: J033092H08 - full reading 
    GGCCGGAGGA AGGAGGAGAC GCCGCCGCCG CCGCCGCAGC CATGTCGGGG 
    GGAATCGCGC GCGGCCGCCT CGCGGAGGAG CGGAAGGCGT GGCGGAAGAA 
    CCACCCACAC GGTTTCGTCG CCAAGCCGGA GACGTTGGCC GACGGGACGG 
    TCAACCTCAT GATCTGGCAC TGCACAATCC CCGGCAAGCA AGGGACTGAT 
    TGGGAAGGTG GATACTTTCC TCTCACTCTT CATTTCAGTG AGGATTACCC 
    TAGCAAACCT CCCAAGTGCA AGTTCCCACA GGGTTTCTTC CACCCAAATG 
    TCTATCCTTC AGGGACAGTC TGCCTTTCAA TTCTTAATGA AGACAGCGGT 
    TGGAGACCTG CTATTACCGT CAAGCAAATT CTTGTTGGAA TCCAGGACTT 
    GCTTGATCAG CCTAATCCTG CTGATCCTGC TCAGACCGAT GGTTACCATC 
    TTTTTATCCA GGATCCTACG GAATACAAGA GGCGTGTTCG GCTGCAGGCC 
    AAGCAGTATC CTCCGATTGT CTGAGAATAT TGGCATAGGG ACCCATGCTG 
    CACATTCGCT TAGTTCTTGC TAGATCTAAA ATGAGTGCCT CTGCAAATAT 
    GGATTAGACC AAAATATGAC CTGGAAAAAG GGTGCTTTCG GAGTTTGAGA 
    AGTATTATCA TCGTTGTGGA CTAATGTCTT GTGAGATCCG TCTTGGATGT 
    AAACGGTTTT CTTAACTGTG ATTTTTCAAC CGTTTGAGTG CTTGCTTTAT 
    GGGATAATGT CAAACATTGG TTTGGCAGGC AATCTCAAGA GTATTGCTAT 
    TTCTGTGCTA GTCTATATGA AAACCCAGAT TAAATTCGAC GAAACATATT 
    AGTTTGC

    Gene models with high sequence identity

    1. AT3G57870.1 [+] show detail - sumo conjugation enzyme 1
      E-value: 6e-87; Score: 317.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ubiquitin-conjugating enzyme, E2 35.707
    superfamily Ubiquitin-conjugating enzyme/RWD-like 6.7e-52
    PatternScan Ubiquitin-conjugating enzyme, E2 0
    HMMPfam Ubiquitin-conjugating enzyme, E2 2.2e-44
    Gene3D Ubiquitin-conjugating enzyme/RWD-like 1.9e-48
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 I 2.8e-102
    HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 2.8e-102
    HMMSmart Ubiquitin-conjugating enzyme, E2 6.2e-66

    See the detailed result >

    AT3G57870.1

    Model type
    Protein coding
    Short Description
    sumo conjugation enzyme 1
    Curator Summary
    Encodes a SUMO liagse that directs the attachment of the small protein SUMO to target proteins via an isopeptide bond. This enzyme is localized to the nucleus and plants with reduced levels of this protein show higher sensitivity to ABA in root growth inhibition assays. It has high similarity to the yeast UBC9 SUMO ligase and is sometimes referred to by that name.
    Computational Description
    sumo conjugation enzyme 1 (SCE1); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquiting-conjugating enzyme 2 (TAIR:AT2G02760.1); Has 9584 Blast hits to 9566 proteins in 388 species: Archae - 0; Bacteria - 0; Metazoa - 4206; Fungi - 2037; Plants - 1834; Viruses - 20; Other Eukaryotes - 1487 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR