K38832

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38832

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38832

Determination of introduced cDNA(s)

  • J023150J15 - Rice Full-length cDNAs - Original: J023150J15

    full reading [+] show sequence

    Nucleotide sequence: J023150J15 - full reading 
    TTCCCCACCA CGCACGCACC GCACAGACGC AAGCTCACCT CAGCTCAGCT 
    CACAATTCGG CTGTATCCAA GATCGCCATG GGCTTCCCGG TGGGCTACTC 
    GGAGCTGCTC CTCCCGAGGC TGCTGCTCCA GGTGCTCCTC CTCCTCGGCC 
    ACCTCCATCG CTTTCTCCTC TGGGCCTTCC ACGCAGTCGG CCTCGGCGAC 
    CTCATCGACA ACCCGCCCGG CCTGGCGGCC ACGGAGCAGG ACCTGATGCT 
    GCAGGGGCGC GGCGGCGGGA TGGCGGAGGG TTGGGCGTCG TCGTCGGCGC 
    TCCAGCACCG CCGGCCCGAG TTCAGGGCGA TTCCGCCGAT GGCCATCGAG 
    GAGGCCCTCC CCGTGGTGCG GTTCGACGAG CTGGTGGCGT CCGCCCCGGC 
    GGCGGTGTGC GGTGGCGGCG ACTGCGCGGT CTGCCTCAGC GGCATCTGCG 
    GGCGCGACGA GGTGCGGCGG CTGTCCAACT GCCGCCACGT TTTCCACCGC 
    GGCTGCCTCG ACCGCTGGAT GGCCCACGAG CAGCGCACCT GCCCGCTCTG 
    CCGCGCGCCG CTCATCCCCG ACGAGCTCTT GCCCGCCGCC TCCGGCCTGC 
    CTGACCCCTC CGACTACGAC CTCTCGTACT ACCCATCCCC GCTGCCGCTG 
    GCGCCCACCC CGACGCTGCT GCGACCACAC GAGCTGCTGC TCAACGGCTT 
    GGGCGGTTTC CAGTGAGCCC GCCAATCCAC CGCCCCGGTC AATTTCGTTG 
    CAACCGGCAT GACAGAGCTG CCTCAACTAC GGCACACGGG CACATAGGCG 
    TCCTGATTTG TACATAGGCG CCAAGGAGAA CTCCCCCCAA AAAAACACAA 
    GTAGGAATAG TTTGCTGCTA TATAGGTCGA TTCCACCTTC CAAGCCTGCG 
    AAGTTGTGAA TCCTTTTTTT TTTGCAGATT ACTAGTAGTA TATTAAATTT 
    GTTGAAGCAG AGCAGTGCCA CAGTTTGGTG CTTGCTAATT TGGCAAGCCG 
    TTTAATCCAA TCTCCCCACG CTATTCAAAT CTT

    Gene models with high sequence identity

    1. AT3G61460.1 [+] show detail - brassinosteroid-responsive RING-H2
      E-value: 6e-24; Score: 108.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily RING/U-box 9e-15
    HMMPfam Zinc finger, C3HC4 RING-type 5.9e-07
    ProfileScan Zinc finger, RING-type 12.238
    Gene3D no description 9.7e-11
    HMMSmart Zinc finger, RING-type 1.1e-05
    HMMPanther gb def: Hypothetical protein At2g28920 5.7e-11
    HMMPanther RING FINGER PROTEIN 11 (SID 1669) (NEDD4 WW D 5.7e-11

    See the detailed result >

    AT3G61460.1

    Model type
    Protein coding
    Short Description
    brassinosteroid-responsive RING-H2
    Curator Summary
    Encodes a novel ring finger protein and forms an N-terminal hydrophobic domain and a C-terminal RING-H2 signature. Expression is down regulated by brassinolide.
    Computational Description
    brassinosteroid-responsive RING-H2 (BRH1); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to brassinosteroid stimulus, response to chitin; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G63840.1); Has 6755 Blast hits to 6739 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 1714; Fungi - 535; Plants - 3593; Viruses - 29; Other Eukaryotes - 884 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR