K38836

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38836

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38836

Determination of introduced cDNA(s)

  • J013075L03 - Rice Full-length cDNAs - Original: J013075L03

    full reading [+] show sequence

    Nucleotide sequence: J013075L03 - full reading 
    GGCCGCCTCT CTCCCCATCC TCCTCCTCCT CCGCCGCCGC CGCCGTCGGG 
    AAGTACACCT GTGCTCTGGT TCCGGCGACA CCGCGAGCGA GGAGAGGAGA 
    GGTGGGGGTG AGGGAGTGAG GGTGAGGCCG GGGTTGGGCA CCACCAGCAA 
    GCCAGCCAGC CCCCCCGTCC CCTTAGATCC GGGCCGGGCG TTCTCCGGCG 
    ATCTCACGGC CATGGCGTCC CGCCGCCTCT TCGCCTCCCT CCTCAGGTCC 
    ACCGCGGCGC CGCGCACCCC GTCCACGCCC GGGTGCCTCT TCAACCGCGC 
    CGCCGCCGCC GCCTACTCCT CGTCCGCCCC CTACAACGGC CAGGGTTTTC 
    CACTTCCTTA GTCTGAAACT GCTTCACGTC TGGGTTTGTT CTCCAGTCCC 
    GGCGACACAC GCCAACCTTC ATACGGAGAC CGTCTAATGC AGTCACAACA 
    GCTGAGTCAA GACTACCGTG CTAGGACACA GGCCAATAAT GCGCCACGTT 
    TTGGTGACAC AATGTCCAGG ATAGCTGGTG GCGAGAACTC TTCCTACTTT 
    GGGACCCCAT CACGCATCTT TGACGAACAC AAACAATCTT TGGTGAAAGG 
    AAAGAGAGAT TTTGTCCATG TCTTGCTGAA GAGAAATAAG ACCTTTGTGA 
    CCGTGACAGA CGTTAGGGGG AACAAAAAGA CCGGGGCATC CGCTGGTTGT 
    TTGGAGGACA GGAAAGGGCG CTCTCGTCTT TCCAAATATG CTGCTGAAGC 
    AACTGCAGAA CATGTCGGGC GTGCTGCCAG GAAGATGGGT TTAAAATCTG 
    TGGTCATGAA AGTGAAGGGA ACTACATTTT TCAATAAGAA GAAGAAAGTG 
    ATCCTGAGCT TTAGAGAAGG CTTTCGGGGT GAAAGAGTAA GGGAGCAATC 
    TCCTGTGGTG CTCATCCACG ATGTGACCCA ACTTCCACAC AACGGATGCC 
    GACTCCCCAA ACAACGCCGG GTTTAGGTCT CAGCGAGCTG GAATCGAACC 
    TGAGTTGAGA GGAGTCGAAG CATTCAAGGT GATCTGGAAG CTCTATTTAA 
    GCTGTGTGAT GTTGGTCTAG TTGACCTAAG ACAGATATGT ATTGTTTCTC 
    TTGGCTCTGC TACTTGAATT GGTTTTGGCA TGACTTATGT TACTCAGTTA 
    GTTAAGTTAT C

    Gene models with high sequence identity

    1. AT1G31817.1 [+] show detail - Ribosomal L18p/L5e family protein
      E-value: 2e-29; Score: 126.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily Translational machinery components 6.3e-28
    Gene3D Ribosomal protein S11 3.4e-24
    HMMPanther gb def: Putative 30S ribosomal protein S11 5.1e-38
    HMMPanther Ribosomal protein S11 5.1e-38
    HMMPfam Ribosomal protein S11 1.5e-17

    See the detailed result >

    AT1G31817.1

    Model type
    Protein coding
    Short Description
    Ribosomal L18p/L5e family protein
    Computational Description
    NUCLEAR FUSION DEFECTIVE 3 (NFD3); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, ribosome, intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S11 (InterPro:IPR001971); BEST Arabidopsis thaliana protein match is: ribosomal protein S11 (TAIR:ATCG00750.1); Has 7495 Blast hits to 7495 proteins in 2576 species: Archae - 12; Bacteria - 4865; Metazoa - 67; Fungi - 4; Plants - 661; Viruses - 0; Other Eukaryotes - 1886 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR