K38927

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	whole plant (PO:0000003)	decreased height (PATO:0000569) (Adult plant::Plant height::short)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) increased width (PATO:0000600) (Rosette leaf::Shape::wide)
	sporophyte vegetative stage (PO:0007134)	decreased speed (PATO:0000304) (Adult plant::Growth::slow)
	stem (PO:0009047)	increased thickness (PATO:0000591) (Stem::Shape::thick)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38927

Determination of introduced cDNA(s)

J023114B06 - Rice Full-length cDNAs - Original: J023114B06

full reading [+] show sequence

GATCCGGAGA CAGTGTCAGA CAAAAAAATC GTGTTCACTG GCCAGCCTCT 
TCTACCCTTC TTCTGATCCT CTCCCGTATA GCCATTTCGT CGAACACCTT 
CCCGAGCCGA CTGCCGCCGC CGCCGCCATG CTCCTCGCGA AGCCCCACCT 
CTCCTCCTCC TCTTTCCTCC CATCCACGCG GGTGTCTAGC CCCGCTCCGG 
GTCCCAACCA CGCAAAGCCC ATCGCCGCCT CTCCCGCCCC TCGACGCTGC 
CTCCGTCTCG CCGTCACATC CGCCGCGGCG CCGGCTGCTT CGTCGGCGGA 
GGCGGCGGCG GCGCTGAGCC GCGTGGATGT GCTCTCAGAG GCGCTCCCCT 
TCATCCAGCG CTTCAAGGGG AAGACCGTGG TGGTGAAGTA CGGCGGCGCG 
GCGATGAAGT CGCCGGAGCT CCAGGCTTCA GTGATCCGCG ACCTGGTCCT 
CCTCTCGTGC GTCGGCCTCC ACCCCGTGCT CGTCCACGGC GGCGGCCCCG 
AGATCAACTC CTGGCTGCTC CGCGTCGGCG TCGAGCCGCA GTTCCGGAAC 
GGCCTCCGCG TCACTGACGC GCTCACCATG GAGGTCGTCG AGATGGTGCT 
CGTCGGCAAG GTCAACAAGC ACCTCGTCTC CCTCATCAAC CTCGCGGGCG 
GAACCGCCGT AGGTCTCTGT GGCAAGGACG CTCGCCTCCT CACCGCGCGC 
CCCTCCCCGA ACGCAGCGGC CCTCGGCTTC GTCGGCGAGG TCTCGCGCGT 
GGACGCCACC GTCCTCCACC CAATCATCGC CTCCGGTCAC ATCGGTCATC 
GCCACTGTGG CCGCCGACGA GACCGGGCAG GCCTACAACA TCAACGCTGA 
CACGGCGGCC GGCGAGATCG CCGCCGCGGT CGGCGCGGAG AAGCTGTTGC 
TGCTCACAGA TGTGTCTGGA ATTCTGGCCG ACCGTAATGA CCCCGGGAGT 
CTGGTGAAAG AGATCGACAT TGCTGGGGTG CGGCAGATGG TGGCCGACGG 
GCAGGTAGCT GGTGGGATGA TACCGAAGGT GGAATGCTGC GTGCGTGCCC 
TCGCACAGGG CGTGCACACT GCAAGCATCA TCGATGGGCG TGTCCCGCAC 
TCGTTGCTGC TCGAGATTCT CACAGATGAG GGCACTGGCA CTATGATCAC 
TGGCTGAGGT GATTCATCCC GTCGTGGTAT TCTCCGGTGC CTCTCTTCTC 
ATACTGTAAT GTAATTTGCA TTTGATATGC CTCATGATTG CAATAAGAAT 
TGTATTCC

Gene models with high sequence identity

AT3G57560.1 [+] show detail - N-acetyl-l-glutamate kinase
E-value: 5e-90; Score: 154.00

InterPro Scan Digest

Program	Description	E-value
Gene3D	Aspartate/glutamate/uridylate kinase	7.5e-42
Gene3D	Aspartate/glutamate/uridylate kinase	2.3e-33
HMMPfam	Aspartate/glutamate/uridylate kinase	4e-16
HMMPfam	Aspartate/glutamate/uridylate kinase	1.2e-17
FPrintScan	Glutamate 5-kinase	0.0000024
FPrintScan	Glutamate 5-kinase	0.0000024
superfamily	Aspartate/glutamate/uridylate kinase	7.4e-32
superfamily	Aspartate/glutamate/uridylate kinase	6.6e-28

See the detailed result >

AT3G57560.1

Model type: Protein coding
Short Description: N-acetyl-l-glutamate kinase
Curator Summary: encodes a N-acetylglutamate kinase, involved in arginine biosynthesis
Computational Description: N-acetyl-l-glutamate kinase (NAGK); FUNCTIONS IN: acetylglutamate kinase activity; INVOLVED IN: arginine biosynthetic process via ornithine, arginine biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: N-acetylglutamate kinase (InterPro:IPR011148), Glutamate 5-kinase (InterPro:IPR001057), Aspartate/glutamate/uridylate kinase (InterPro:IPR001048), Acetylglutamate kinase (InterPro:IPR004662); BEST Arabidopsis thaliana protein match is: N-acetyl-l-glutamate synthase 2 (TAIR:AT4G37670.2); Has 9387 Blast hits to 9387 proteins in 2227 species: Archae - 281; Bacteria - 6131; Metazoa - 9; Fungi - 140; Plants - 140; Viruses - 0; Other Eukaryotes - 2686 (source: NCBI BLink).
Link: InterPro Scan - TAIR