K38930

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38930

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
seed (PO:0009010)
  • increased width (PATO:0000600)
    (Seed::Shape::wide)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
stem internode (PO:0020142)
  • decreased length (PATO:0000574)
    (Stem::Shape::short internode)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38930

Determination of introduced cDNA(s)

  • J033128J01 - Rice Full-length cDNAs - Original: J033128J01

    full reading [+] show sequence

    Nucleotide sequence: J033128J01 - full reading 
    TGCTTTGAGC CAAAAAGGTT AGAGCTTTTG TGTTCTTCCC CCACAAATAT 
    CCCCTAGTGC CTTTTGTTTG GCCGTGGTGT GGAAAAGCAT ATGAATGGGG 
    GAGCATCTCA ATTGGCATAC TGCTGTTGCC CCCCAGCTTA GCTATCCCTT 
    TCCATCCCTG CAAGAACCCT TCTTTATAGA TCTGTGCCCT TGCTGTTCAT 
    GGAACCCTGT GATTGAGGGG TTTCCTCATT TGGTCTCTCA CTCGCGGTGT 
    AAACAAAGTA TATGCTCCAA GTAAGCTGCT ACTTTTAGCT GCTTCTCTGA 
    TTCTTGAGTG ATCTCCAAGT GCAGAAGGAG AGGGAGGAGG AGATGGGGGA 
    GTGCGGCGGC GGCGAGTACA GGTGCTGGGA GGAGCTTCTG CCGGACGCGC 
    TGGGGCTCGT CTTCCGGAAC CTGCCGCTCC GGGAGGTGCT GACGGTGGTG 
    CCACGGGTGT GCAAGTCGTG GAGCCGGGTG GTGGCCGGGC CGTACTGCTG 
    GCAGGAGATC GACATCGAGG AGTGGCGGCA GCAGCAGGGC AAGCCCGAGC 
    AGCTCGTCCG CATGGTGGAG ATGCTCGTCG CACGCAGCTG CGGCTCCTGC 
    CGCCGCATCA GCGTCTCCGG CCTCCCCGGC GACCCGCTCT TCTCCTTCAT 
    CGGAGACCAT GCACGGGCAC TGAGGACGCT GGAGATTCCA CGGAGCGAGA 
    TCAGCGACGC GGCGGTGGAG AGCGTGGCGC CGAGGCTGCC CAACGTGACG 
    TTCCTGGACA TCAGCAGCTG CACCAAGATC GGGGCGCGCG CGCTGGAGGC 
    GTTCGGCAAG AACTGCAAGT CGCTGGTGGG GCTCCGGCGG GTGATGCACC 
    CGACGGACGT CGCCGGCAAG GCGTGCCAGC GCGACGAGGC GCGCGCCATC 
    GCCTGCACCA TGCCGAGGCT CCGGCACCTG GAGATGGGCT ACATGGTGAT 
    CGCGACGGAT GCGGTGCTCG ACATCCTCGC GCGGTGCCGC GAACTCCGGT 
    TCCTCGACCT CCGCGGCTGC TGGGCCGTCG ACGACAAGTT CCTGCAGGAG 
    AGGCACCCGG GGCTGAGGGT GCTCGGCCCC GGCGTCGACG ACTGCTTCGA 
    GAACAGCTAC CTGGAGGAGT GCTCCGACTA CTCCGACGAC TCCTCCATCT 
    ACTCGTGGGA GCTCATGGAG GACGACGACG ACGACTACTA CGCCGTCGGG 
    AGCGACGACG AGGCCATTTG GGACGACGGC CAGGGCCTCG AGAACCTGGA 
    GGTCAGGTTC TACGGCGGCG GCTTCAGCGA GAGCTATGCT GGCTTCGATT 
    GGCCACCATC ACCATGACCA TGAGAGCAGC TCAGCTCAGC TCAGTCCCTG 
    ACCTCACTGT CCTTGCTCTT CCTCTCGAGC CGTGTACCTA AGCTTGCAGT 
    TGCAGTCTCG CAGATGTGTT GTTGTACTCT GTGTGTGTGC GCGTGTGCCA 
    GTGTGTCATC AGCATCACTA GCTTGCAGTG CAGATATGTG TGAGTGAACT 
    TCTACGGCTA GTTGTTACTA CTACTACATC CAGATGTAAA CTTTGGTGTT 
    TACATG

    Gene models with high sequence identity

    1. AT4G08980.5 [+] show detail - F-BOX WITH WD-40 2
      E-value: 1e-73; Score: 274.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther N7-RELATED PROTEIN 1.2e-38
    HMMPanther F-BOX/LEUCINE RICH REPEAT PROTEIN 1.2e-38
    superfamily RNI-like 1.1e-18
    Gene3D no description 1.1e-37

    See the detailed result >

    AT4G08980.5

    Model type
    Protein coding
    Short Description
    F-BOX WITH WD-40 2
    Curator Summary
    Encodes an F-box gene that is a novel negative regulator of AGO1 protein levels and may play a role in ABA signalling and/or response.
    Computational Description
    F-BOX WITH WD-40 2 (FBW2); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process, posttranscriptional regulation of gene expression; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT4G05460.1); Has 1165 Blast hits to 1048 proteins in 88 species: Archae - 0; Bacteria - 0; Metazoa - 539; Fungi - 16; Plants - 571; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR