K38934

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38934

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38934

Determination of introduced cDNA(s)

J013000E05 - Rice Full-length cDNAs - Original: J013000E05

full reading [+] show sequence

GAGCGGTGCG GTCGTGCGGA TAACGAACGA ACGAAGAGAA AGCATGGCAA 
TGGCAATGGC GGCGATGAGA GGGGCGGCGG CGAGCTTGGG TCCGGGCGCT 
GTGTCTTGGA ACTCGAAGCG CTTCTTCCTC TCCTCCTCCT CCACCACCAG 
CCGCCCCCAT CGTCGTCGTC TACGCGCCTT CCCGAGCTCG GAGCAAACTC 
TGGAGGAGCT TAACCCTTCC GTTGAGCTGC TCAGGAAAAC TGCGGAGGCC 
GTTGGCGATT TCAGGAAAAC ACCCATCTAC ATCGTCGGAA CCGACTGTAC 
TGCCAAGCGC AACATTGCAA AGCTCCTTGC CAATTCCATC ATATACCGCT 
ACCTCTGCAG TGAAGAGCTG CTGGAGGATG TTCTTGGAGG CAAAGATGCC 
CTCAATGCTT TCCGGGAATC CGACCTCAAC GGCTACCTCG AAGTCGAGAC 
TGAAGGCCTG AAACAGCTCA CCTCCATGGG CAGCCTCGTG CTTTGCTGTG 
GGGATGGTGC TGTCATGAAC TCAACCAATC TAGGGCTACT GAGGCATGGA 
GTCTCCATTT GGATTGATAT TCCTCTGGAA TTGGTGGTGA ATGATATGTT 
GAAGACACAA GCTACTTCAG ACCCTGATTC CTTTTCTGAG GCAATGAGCA 
GAGTCCGACA GCGACACGAT GAACTAAAAG AGCGCTATGG AGTTTCTGAT 
ATAACTGTTT CAGTACAAAA TGTGGCATCT CAACTGGGCT ACAGTAGCAT 
CGACTCAGTG ACCCTAGAGG ACATGGTCCT TGAGATTGTG AGGCAAATAG 
AGAGGCTGAT CCGAGCGAAG TCGATGATGG AAGCTGCTGG GAAGCCCTTC 
TAAAAGAAGG AAGGATCCAT TGATGTATAG ACTGTTGGTC ATGTATGTAC 
CTCCTGATCC CTGAGGAATT GCCTTAGATG TTCCAGGACC AGGAAGCAAA 
AAGTGCCGCC ACAGCTACTG ATTGATTAAT TTTGTACCGA ATGATCAATC 
ATTCGATTGA TATTTTTACA TTCCCTTGTG ACTTGTGAGG GAGACATATG 
TAGCAGAATG AAAAAGAAGT CGAATTTATT TTCAAAAAAA GAAGCTGTGA 
GTGTGGCTAG AATCTACACT TGTTC

Gene models with high sequence identity

AT3G26900.3 [+] show detail - shikimate kinase like 1
E-value: 5e-40; Score: 162.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Shikimate kinase	1e-14
HMMPanther	SHIKIMATE KINASE	6.9e-29
superfamily	P-loop containing nucleoside triphosphate hyd	6.5e-08
Gene3D	no description	2.6e-13

See the detailed result >

AT3G26900.3

Model type: Protein coding
Short Description: shikimate kinase like 1
Computational Description: shikimate kinase like 1 (SKL1); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Shikimate kinase (InterPro:IPR000623); BEST Arabidopsis thaliana protein match is: shikimate kinase 1 (TAIR:AT2G21940.5); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR