K38939

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38939

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38939

Determination of introduced cDNA(s)

  • J023140L15 - Rice Full-length cDNAs - Original: J023140L15

    full reading [+] show sequence

    Nucleotide sequence: J023140L15 - full reading 
    GACCACCGCC TCGGCGGGCT GTATCTCAGA TTAGGAGAAC CTGACAAGGC 
    AATCCACCAC TTCAAGCAAT CGGCGAACGA CTCGACGGGC GCGGACGTGT 
    CGCGCGCACA GTCGGTCAAG AGCCGCGTCG CCAAGTGCGG CGACGCGCGC 
    AAGCTGAGGA ACTGGATCAC GGTGCTGCAG GAATCGCAGG CCGCCGTCGC 
    CGACGGCGCC GACTGCGCCC CACAGGTCAT GGCGTTGCAA GCCGAGGCCC 
    TGGTGAAGCT GAGCCGGCAC GACGAGGCCG ACGCTGTGCT GGGCGGCGCG 
    CCGCGGTTCG GCGTCGACGA ATCGACCAAG TTCTTCGGCA CCGTCGCCCA 
    TGCCTACGTC CTCATGATCC GTGCTCAGGT CGACATGGCT GCTGGGAGGT 
    TTGAGGACGC GGTGGCGACG GCGCAGACGG CGTGCCAGCT CGACCCGAGC 
    AACCGGGAGA TCGCGAACGT GCACCGGCGG GCCAAGGTGG TGGCGTCGGC 
    GAGGCTGCGC GGGAACGACC TCTTCAAGGC GTCCAGGTTC GCCGAGGCGT 
    GCGCCGCCTA CTGCGAGGGC CTCGACAGGG AGACCGGCAA CGCCGTGCTG 
    CTCTGCAACC GCGCCGCGTG CCACGCGAGG CTCGCGCGGT ACGAGAAGGC 
    CGTCGAGGAC TGCAACGGCG CGCTCGCCAT GCGGCCGGCG TACAGCAAGG 
    CGCGCCTCAG GAGGGCCGAC TGCAACGTCA AGCTGGAGAG ATGGGAAGCG 
    TCGTTGCGAG ATTACCAGGT GCTGATCCAA GAACTCCCGG AGAACGAGGA 
    CATGAAGAAG GCGCTGTCCG AGGTCGAAGC CAAGCTCCGG AGCCAGAGGA 
    ATGGGGGCAT TGCAAGCAGA TCACAACAGT GACGCCATGC TTCTTTAATC 
    TGTCGGCTAC CCGAAATCAA CTGCAAGATC TGAAGAGGAC AAGACTTTGG 
    ACAAAACAAT GCAGCACGCA CCATTGCGCG GTTTGTTAGT GTCAAGTCAG 
    TATGATTCTT TTTTTGTGCA CTATACGCCA AATTACAAGA GAATTGAGAG 
    TAATGAAACT GTACATAATA CTTGCTGCAC CGAGAAGTAT AGCTAGTTAA 
    TTTGAATGTG GGTTGGCAGT GATAGCAACC ATGAAAGTTT CTGAAGATTT 
    AAGTTTGCCT CACACAAAAA ACATACTGGG TTGTACTTTG TACTACAAAA 
    CTAATATCCA TCCCAAACAG AAAATGAGTG AGTATCCATT TGAGC

    Gene models with high sequence identity

    1. AT5G65160.1 [+] show detail - tetratricopeptide repeat (TPR)-containing protein
      E-value: 2e-83; Score: 306.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D Tetratricopeptide-like helical 0.00074
    Gene3D Tetratricopeptide-like helical 7e-26
    superfamily TPR-like 5.4e-22
    superfamily TPR-like 2.7e-07
    HMMPanther DNAJ-RELATED 9e-91
    HMMPanther Molecular chaperone, heat shock protein, Hsp40, DnaJ 9e-91
    HMMSmart Tetratricopeptide repeat 8.3
    HMMSmart Tetratricopeptide repeat 200
    HMMSmart Tetratricopeptide repeat 0.0031
    HMMSmart Tetratricopeptide repeat 40
    ProfileScan Tetratricopeptide repeat-containing 7.138
    ProfileScan Tetratricopeptide repeat-containing 14.078
    Coil coiled-coil 0

    See the detailed result >

    AT5G65160.1

    Model type
    Protein coding
    Short Description
    tetratricopeptide repeat (TPR)-containing protein
    Computational Description
    tetratricopeptide repeat (TPR)-containing protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide TPR2 (InterPro:IPR013105), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G10090.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR