K38948

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38948

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38948

Determination of introduced cDNA(s)

  • J033117A10 - Rice Full-length cDNAs - Original: J033117A10

    full reading [+] show sequence

    Nucleotide sequence: J033117A10 - full reading 
    GTTCCGTTGC GCTCGTCTCC TCCTCTCGCC GCGCCGCCGC CCCCCGCCCC 
    CACGATCGAC GACTCGCCGC GCCGCCGCCG CCGCCGCCGC CAACGCATGC 
    AGGCAAGATG AAGTTCGGTG CAATATATGA AGAGTATCTT CGGGAACAGC 
    AAGACAAATA CCTAACAAAG TGCTCACATG TGGAGTACAA ACGTCTCAAA 
    AAGGTACTGA AGAAATGTCG AGTTGGTCGC TCATTGCAAG AAGACTGCCC 
    CAATGGTGAC CAGCAGGAGG GGAACAACGA ATCTCCAGAT ATTTGCAAAT 
    GCAATTCATG CACATTGTGT GATCAAATGT TCTTTACAGA ACTTACTAAG 
    GAGGCTTCAG AAATAGCTGG CTGTTTCAGC TCTAGAGTAC AACGTCTCCT 
    AAATCTTCAT GTCCCTTCAG GATTTCTACG CTATATTTGG CGTGTAAGGC 
    AATGTTTCAT AGATGATCAA CAAATCATGG TTCAAGAAGG CAGAATGTTA 
    CTTAATTATG TAACCATGAA TGCTATCGCT ATCCGTAAAA TTCTGAAGAA 
    GTATGACAAA ATACATGGTT CTGTCAGTGG TAGAGATTTC AAGAGCAAGA 
    TGCAAACTGA TCATATTGAA CTGTTGCAGT CCCCTTGGCT GATAGAACTG 
    GGTGCTTTCC ATCTAAACTG CAATAGTTCA GATATTGATG AAACTGTGGG 
    GTTCCTTAAG AATGAGTTCT TCAAGAATTT TTCCTGTGAT TTGACCGAAG 
    CACGACCACT AATGACTATG GCTATTTCTG AAACTATGAA GTATGAGTAC 
    AGCCTAACTT GTCCAATTTG CTTGGGTACT TTGTTCAACC CATATGCACT 
    TAGCTGTGGC CATCTCTTTT GCAAAGGCTG TGCTTGTGGA GCTGCTTCTG 
    TGTACATCTT TCAAGGTGTT AAGTCTGCAC CTCCTGAGGC GAAGTGTCCT 
    GTATGCCGAT CGGATGGTGT CTTTGCTCAT GCTGTGCATA TGACTGAACT 
    TGACTTGCTC ATCAAAACAA GGAGCAAGGA TTACTGGAGA CAGAGACTGC 
    GAGAAGAGCG GAATGAGATG GTTAAGCAAT CCAAAGAATA CTGGGACTCT 
    CAGGCTATGC TGTCAATGGG AATTTGACTG AGATCTGAAG TTACAATGAT 
    CGCCATTCAT TGCTTGCATT GGTGTCAAAC CAAAAATAAT CAGGTCGACC 
    ATAATCTCAA GCGTGGAGAT CATCCAAGAT GATTTTAACT TATTAACTGC 
    CAGTCTCCTA AAAGTTGCAA TCAGTGAGGA CTACCTTGGG ATAGCACAGG 
    CTAACACAGC TGAGGTTATT TTATTTTAGC TCTTGAAGAA GCAATTCCAT 
    TCCATTATTT TTTGTCCTAA TGTTGTCGCC TGATATAGTT TAATTTGGAA 
    ATGCAACCAT ATTTAATTAA TTTTCTTTGG ACCTTCAAAT GTAGTTTGGA 
    ACAATTTATA CGCAATTTAT CTGTTCTTTG CTTTGTAAAA ACGAGTGTAG 
    AAATGTCTTA TTTGAATGTC TCTGGCTCGC TGCCG

    Gene models with high sequence identity

    1. AT2G38920.1 [+] show detail - SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-re...
      E-value: 5e-100; Score: 362.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Zinc finger, RING-type 0.0000029
    Gene3D no description 0.00000000000055
    ProfileScan Zinc finger, RING-type 11.486
    ProfileScan SPX, N-terminal 14.45
    HMMPanther ZINC FINGER PROTEIN 228 0.000059
    HMMPanther RING FINGER DOMAIN CONTAINING PROTEIN 0.000059
    HMMPfam SPX, N-terminal 0.00000014
    HMMPfam SPX, N-terminal 0.00000000012
    superfamily RING/U-box 0.00000000000015
    PatternScan Zinc finger, RING-type, conserved site 0

    See the detailed result >

    AT2G38920.1

    Model type
    Protein coding
    Short Description
    SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related
    Computational Description
    SPX (SYG1/Pho81/XPR1) domain-containing protein / zinc finger (C3HC4-type RING finger) protein-related; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), SPX, N-terminal (InterPro:IPR004331); BEST Arabidopsis thaliana protein match is: SPX (SYG1/Pho81/XPR1) domain-containing protein (TAIR:AT1G02860.1); Has 1650 Blast hits to 1628 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 1103; Fungi - 156; Plants - 232; Viruses - 1; Other Eukaryotes - 158 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR