K38949

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38949

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Elements::Others::K

Original: K38949

Determination of introduced cDNA(s)

J033104P13 - Rice Full-length cDNAs - Original: J033104P13

full reading [+] show sequence

GGTCTTGTCT GACTTCTTGT TGCCTCTTGC CTCCTTCTTC TTCTTCTTCG 
TCTTCGTCGT CGCGAAATAC AGGCGTGTGG GGCGAGAGTG ATCAGGTGGC 
AGCTGGGTGT TTCTTCTTCT TCTTCTTCAG CTCGAGTTCT TCCTTAGCCA 
TGGCGCTCCT GCTGCTGCGT ATGGGCGTCT CCGTCGCGCT GCTCGTCGCC 
TTCTTCTCCT CTCTGATTCC GTCGTCAGAG GCATACGATC CGCTTGATCC 
AAATGGGAAC ATAACAATCA AGTGGGATGT GCTGCAATGG ACTCCAGATG 
GATATGTTGC TGTTGTTTCA CTATACAACT ATCAGCAGTA TCGACACATT 
CAATCACCCG GATGGAAACT CGGATGGGTG TGGGCAAAGA AGGAGATAAT 
CTGGGCGATG AACGGCGGCC AAGCGACGGA GCAAGGCGAC TGCTCAAAGT 
TCAAATCAAA TATCCCACAT TGCTGCAAGA AAGATCCTGA GATCGTGGAC 
CTGCTCCCGG GAACCCCTTA CAACATGCAG ATTGCCAACT GCTGCAAGGG 
AGGAGTGCTC AACTCGTGGG CACAGGACCC TGCAAATGCC ATAGCATCAT 
TCCAAGTCAG TGTTGGTCAG GCAGGGACGA CGAACAAGAC GGTGCGGGTG 
CCGAGAAATT TCACCCTGAA ATCTCCAGGT CCAGGGTATA CCTGTGGCAG 
TGCCAAGGTT GTGAGACCTA CCAAGTTTTT TTCGCAGGAT GGAAGGAGAA 
CAACTCAGGC TCACATGACA TGGAATGTGA CTTGCACATA TTCACAGATT 
GTCGCGCAAA GATCTCCGAC GTGCTGCGTT TCGCTCTCGT CTTTTTACAA 
TGATACCATA GTTAACTGCC CAACATGCTC ATGTGGCTGC CAGAATAATA 
AACCAGGAAG CTGTGTAGAG GGAAATTCTC CTTATTTGGC TTCTGTTGTG 
AACACCCATA ACAAGGACAG CTTGACACCT CTAGTCCAGT GCACTTCTCA 
TATGTGCCCA ATAAGAGTTC ATTGGCATGT GAAGGTTAAC TACAAGGAGT 
ACTGGAGGGT CAAGATCACA GTGACAAACT TCAATTACAG GATGAACTAC 
TCTCAGTGGA ACCTAGTCAC TCAGCACCCC AGTTTTGACA ATCTGACAAC 
CATTTTCAGC TTCAACTACA AATCTTTGAA CCCATATGGA GTAATAAATG 
ATACCGCGAT GTTATGGGGA ATCAAGTACT ACAATGACTT GCTCATGACG 
GCGGGTCCAG ATGGAAATGT TCAGTCTGAG CTTCTGTTCA AGAAGGACCC 
CAAGAGTTTC ACCTTTGAGA AAGGCTGGGC CTTCCCAAGA CGTGTATACT 
TCAATGGTGA CAACTGTGTG ATGCCACCAC CAGATGCATA TCCATGGCTG 
CCAAATGCTT CAACAAGAGT GATGTCTTCA ATTCTCCTTC CATTCATTAC 
CATTTGGACA GCACTGACAT TCTTGATGGT TTACGCATAG TGAAAGGAAA 
TCGTAATTTT ACGTATTCAG GAAAGTTTTG ACCTTGTTGT GCATTACAAA 
GTTTTAGATG ATATGTTGCA TGAAGAGAAG ATTCAGTGCA GATACCTAAC 
CATAAACCGT CGTTGATCAT TGTATAAACT TACTTGTATA CATTTAATCT 
CAGACAAGAT AAGATGCAAA CACAGTACTT CTTAAGGAAT TTTATCCTCT 
CTTCCTTTT

Gene models with high sequence identity

AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
E-value: 0; Score: 701.00

InterPro Scan Digest

Program	Description	E-value
HMMPfam	Glycosyl-phosphatidyl inositol-anchored, plant	3.7e-72
HMMPIR	COBRA-like	0
BlastProDom	Glycosyl-phosphatidyl inositol-anchored, plant	2e-118
Coil	coiled-coil	0

See the detailed result >

AT5G60920.1

Model type: Protein coding
Short Description: COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
Curator Summary: Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
Computational Description: COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR