K38949

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38949

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Original: K38949

Determination of introduced cDNA(s)

  • J033104P13 - Rice Full-length cDNAs - Original: J033104P13

    full reading [+] show sequence

    Nucleotide sequence: J033104P13 - full reading
    GGTCTTGTCT GACTTCTTGT TGCCTCTTGC CTCCTTCTTC TTCTTCTTCG 
    TCTTCGTCGT CGCGAAATAC AGGCGTGTGG GGCGAGAGTG ATCAGGTGGC
    AGCTGGGTGT TTCTTCTTCT TCTTCTTCAG CTCGAGTTCT TCCTTAGCCA
    TGGCGCTCCT GCTGCTGCGT ATGGGCGTCT CCGTCGCGCT GCTCGTCGCC
    TTCTTCTCCT CTCTGATTCC GTCGTCAGAG GCATACGATC CGCTTGATCC
    AAATGGGAAC ATAACAATCA AGTGGGATGT GCTGCAATGG ACTCCAGATG
    GATATGTTGC TGTTGTTTCA CTATACAACT ATCAGCAGTA TCGACACATT
    CAATCACCCG GATGGAAACT CGGATGGGTG TGGGCAAAGA AGGAGATAAT
    CTGGGCGATG AACGGCGGCC AAGCGACGGA GCAAGGCGAC TGCTCAAAGT
    TCAAATCAAA TATCCCACAT TGCTGCAAGA AAGATCCTGA GATCGTGGAC
    CTGCTCCCGG GAACCCCTTA CAACATGCAG ATTGCCAACT GCTGCAAGGG
    AGGAGTGCTC AACTCGTGGG CACAGGACCC TGCAAATGCC ATAGCATCAT
    TCCAAGTCAG TGTTGGTCAG GCAGGGACGA CGAACAAGAC GGTGCGGGTG
    CCGAGAAATT TCACCCTGAA ATCTCCAGGT CCAGGGTATA CCTGTGGCAG
    TGCCAAGGTT GTGAGACCTA CCAAGTTTTT TTCGCAGGAT GGAAGGAGAA
    CAACTCAGGC TCACATGACA TGGAATGTGA CTTGCACATA TTCACAGATT
    GTCGCGCAAA GATCTCCGAC GTGCTGCGTT TCGCTCTCGT CTTTTTACAA
    TGATACCATA GTTAACTGCC CAACATGCTC ATGTGGCTGC CAGAATAATA
    AACCAGGAAG CTGTGTAGAG GGAAATTCTC CTTATTTGGC TTCTGTTGTG
    AACACCCATA ACAAGGACAG CTTGACACCT CTAGTCCAGT GCACTTCTCA
    TATGTGCCCA ATAAGAGTTC ATTGGCATGT GAAGGTTAAC TACAAGGAGT
    ACTGGAGGGT CAAGATCACA GTGACAAACT TCAATTACAG GATGAACTAC
    TCTCAGTGGA ACCTAGTCAC TCAGCACCCC AGTTTTGACA ATCTGACAAC
    CATTTTCAGC TTCAACTACA AATCTTTGAA CCCATATGGA GTAATAAATG
    ATACCGCGAT GTTATGGGGA ATCAAGTACT ACAATGACTT GCTCATGACG
    GCGGGTCCAG ATGGAAATGT TCAGTCTGAG CTTCTGTTCA AGAAGGACCC
    CAAGAGTTTC ACCTTTGAGA AAGGCTGGGC CTTCCCAAGA CGTGTATACT
    TCAATGGTGA CAACTGTGTG ATGCCACCAC CAGATGCATA TCCATGGCTG
    CCAAATGCTT CAACAAGAGT GATGTCTTCA ATTCTCCTTC CATTCATTAC
    CATTTGGACA GCACTGACAT TCTTGATGGT TTACGCATAG TGAAAGGAAA
    TCGTAATTTT ACGTATTCAG GAAAGTTTTG ACCTTGTTGT GCATTACAAA
    GTTTTAGATG ATATGTTGCA TGAAGAGAAG ATTCAGTGCA GATACCTAAC
    CATAAACCGT CGTTGATCAT TGTATAAACT TACTTGTATA CATTTAATCT
    CAGACAAGAT AAGATGCAAA CACAGTACTT CTTAAGGAAT TTTATCCTCT
    CTTCCTTTT

    Gene models with high sequence identity

    1. AT5G60920.1 [+] show detail - COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
      E-value: 0; Score: 701.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glycosyl-phosphatidyl inositol-anchored, plant 3.7e-72
    HMMPIR COBRA-like 0
    BlastProDom Glycosyl-phosphatidyl inositol-anchored, plant 2e-118
    Coil coiled-coil 0

    See the detailed result >

    AT5G60920.1

    Model type
    Protein coding
    Short Description
    COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family
    Curator Summary
    Encodes a glycosylphosphatidylinositol-anchored protein localized primarily in the plasma membrane of the longitudinal sides of root cells. Necessary for oriented cell expansion in Arabidopsis. Cob mutants have abnormal roots that expand radially rather than longitudinally under certain growth conditions.
    Computational Description
    COBRA (COB); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress, multidimensional cell growth, cellulose microfibril organization; LOCATED IN: in 6 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Glycosyl-phosphatidyl inositol-anchored, plant (InterPro:IPR006918), COBRA-like (InterPro:IPR017391); BEST Arabidopsis thaliana protein match is: COBRA-like protein 1 precursor (TAIR:AT3G02210.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR