K38951

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K38951

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K38951

Determination of introduced cDNA(s)

  • J013075G21 - Rice Full-length cDNAs - Original: J013075G21

    full reading [+] show sequence

    Nucleotide sequence: J013075G21 - full reading
    GGATTGTGGC TTGATAGGAT CGTCCGGACC TGACGGGAGA AGGCGTGGGT 
    TCGTGCGACG GGACCTCGAT TCGTCCATCC AGCTTCCACT ACCCCTCCGC
    GCGCTGCCTA GATCTTTCCT CTCTCTCGCA CCCTCTTATT GGCGGAGGAG
    GAGGAGGGAT GGTGCGGGAG GTTGCGGAGA GCTGTGCCGA CGGGGTGGTG
    ATGGAGATGG TGGCGGCCTA CTGCGGCCGC TTCTACGCCG CCAAGCCGGA
    GCTCGCCGCC CGCCGCATCG AGGCCATCGG CTTCCAGGTC GGCCACCAGC
    TCACGGAGAG ATATACCATG GAGCGCCCTC GATTTAGTGA TCATCTTGAA
    GCAATCAAAT TTATCTGCAA AGACTTTTGG TCAGAGCTAT TCAAGAAGCA
    GATTGACAAT CTTAAAACTA ATCATAGGGG AACATTTATT CTTCAAGATA
    ACCGTTTCCG GTGGCTTACT CGTGTTTCTA TAGATCCATC TGTAGAGAGC
    ATGGATGCAA CTGACAATGA CTCTGCAACA CTAGGGGATA GCGCAGCCCA
    AACAACAAGC ATGCTTCTGT ACTTTCCATG CGGGATAATA AGAGGTGCCT
    TGACCAATTT GGGTATTTCG TGTTCTGTCA CTGCAGACAT GTCCAACCTT
    CCAGCATGTT CTTTTGTTGT GCGCATAAAA ACATGAGCTG CAGATTTTAT
    GCCTGCTTGT TCGATCAAGC GGTTTGAACA TTAAAGAGTG CAAGCACGCA
    ATAGCCTGGG AAATACGCCT TGTAGCTGCT CCTTTTTCTT TCTCTTTGTT
    CTTAGAGGCA CCTCTTTACT TACTGACTTC ATCATACCTT CCTTTGTGCA
    CATCTTAAGA TTGGGTGTAA TTTTGTGATT CGTGTGAACA AGAGAAGACA
    AAATGTAATA TTTCTCCTGA GATACTGGCT AGAGCCATGT AATTTTGTTG
    TCTAGCAGTG GAGAATGTTT TATCTTGT

    Gene models with high sequence identity

    1. AT3G05000.1 [+] show detail - Transport protein particle (TRAPP) component
      E-value: 4e-74; Score: 275.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Transport protein particle (TRAPP) component 6.5e-38
    HMMPanther TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 2e-70

    See the detailed result >

    AT3G05000.1

    Model type
    Protein coding
    Short Description
    Transport protein particle (TRAPP) component
    Computational Description
    Transport protein particle (TRAPP) component; CONTAINS InterPro DOMAIN/s: Transport protein particle (TRAPP) component (InterPro:IPR007194); Has 457 Blast hits to 457 proteins in 189 species: Archae - 0; Bacteria - 0; Metazoa - 198; Fungi - 137; Plants - 66; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR