K39014

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39014

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39014

Determination of introduced cDNA(s)

  • J013151A20 - Rice Full-length cDNAs - Original: J013151A20

    full reading [+] show sequence

    Nucleotide sequence: J013151A20 - full reading 
    GACGGTCCTC ATCAAGCGTT TTGCCGATGG GGAAATCTAC GTGCAGCTGC 
    AGGAGAGTGT GAGGGGTTGC GATGTGTTCT TGGTGCAGCC CACCTGCTCC 
    CCTGTTAATG AAAACCTTAT GGAGCTTTTT GTCATGATCG ACGCATGTCG 
    GCGGGCGTCG GCGAGGTCTA TTACTGTTGT CATTCCATAC TTTGGGTATG 
    CCAGAGCTGA CAGAAAGGCT CAAGGACGTG AGGCCATTAC TGCCAAACTT 
    TCTGCTAATT TACTTACAGA AGCTGGGAGT GATCGTGTAA TTGTATGTGA 
    TATTCATTCC ACTCAAGCAT TGGGATACTT CGATATTCCT GTGGATCATA 
    TACATGGACA GCCTGTGATT CTGGATTACC TTGCCAGTAA GACAATATCT 
    AAGGATCTTG TGGTGGTTTC TCCTGATGTG GGTGGTGTTG TCAGAGCACG 
    TGCATTTGCT AAGAAATTAT CTGATGCCCC TTTAGCTATC GTTGATAAGA 
    GAAGACAGGG TCACAACATG TCAGAGGTCA TGCACTTAAT TGGTGATGTG 
    AAGGGTAAGG TCGCCATCAT GGTTGATGAT ATGATAGACA CAGCAGGAAC 
    AATTACTAGT GCAGCTGCTT TGTTAAAACA GGAGGGAGCA GAGGCTGTCT 
    ATGCTTGTAG CACACATGCT GTCTTCAGCC CTCCTGCGAT TGAAAGGCTC 
    TCTGGAGGCA TCTTTGAGGA AGTTATTGTG ACAAACTCCA TTCTGCTGCC 
    AGAGCACAAA TGCTTCCCCC AGTTGACAGT GCTCTCAATG GCGAACCTTG 
    TGGCAGAAAC AATCTGGCAT GTTCATCGCG ATGGCTCTGT GAGCAGCATA 
    TTTCAATAGC GGCGGATGCT ATGGCTACCG CGATGCCACA TTTGTGTGGT 
    GTGGAGAAGG CACCTGATGG TTGTGCCCAT CTGCGTAGGA ATCAATTTTG 
    GTGACAAGAC TAAATAAGGT TGTAGTGCCG TGTAGGCATC ACACATGTAT 
    CGTGTGATCA ATTTTGTTCT TGCACCCACT AAATAGTGTT TTCCTGTTAA 
    CTCGACGCAG GATATCCATT GTATCAAGTA TAAGAGAATC AGTCTCGTGC 
    AGTTCTTTC

    Gene models with high sequence identity

    1. AT2G35390.2 [+] show detail - Phosphoribosyltransferase family protein
      E-value: 4e-120; Score: 428.00

     

    InterPro Scan Digest

    Program Description E-value
    Gene3D no description 4.9e-54
    PatternScan Phosphoribosyl pyrophosphate synthetase, conserved site 0
    HMMTigr Phosphoribosyl pyrophosphokinase 2.8e-110
    HMMPfam Phosphoribosyltransferase 1.8e-13
    superfamily PRTase-like 1.6e-61
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 1,2,3,4 3.8e-177
    HMMPanther RIBOSE-PHOSPHATE PYROPHOSPHOKINASE 3.8e-177

    See the detailed result >

    AT2G35390.2

    Model type
    Protein coding
    Short Description
    Phosphoribosyltransferase family protein
    Computational Description
    Phosphoribosyltransferase family protein; FUNCTIONS IN: magnesium ion binding, ribose phosphate diphosphokinase activity; INVOLVED IN: cellular biosynthetic process, nucleotide biosynthetic process, nucleoside metabolic process, ribonucleoside monophosphate biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, LP.10 ten leaves visible, LP.12 twelve leaves visible; CONTAINS InterPro DOMAIN/s: Phosphoribosyltransferase (InterPro:IPR000836), Phosphoribosyl pyrophosphokinase (InterPro:IPR005946), Phosphoribosyl pyrophosphate synthetase, conserved site (InterPro:IPR000842); BEST Arabidopsis thaliana protein match is: phosphoribosyl pyrophosphate (PRPP) synthase 2 (TAIR:AT1G32380.1); Has 11486 Blast hits to 11227 proteins in 2803 species: Archae - 263; Bacteria - 6160; Metazoa - 635; Fungi - 723; Plants - 205; Viruses - 13; Other Eukaryotes - 3487 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR