K39020

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39020

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39020

Determination of introduced cDNA(s)

  • J013001G04 - Rice Full-length cDNAs - Original: J013001G04

    full reading [+] show sequence

    Nucleotide sequence: J013001G04 - full reading 
    TATAGTAGCA GTGACCACAC AAGCTTACCT GAGCTTGAGA GCTCAGCATT 
    ATCTTCTCAG TCTTGTTCTC CCTTCACAGT TTCAGATTTA TGCTCTTTGG 
    CTGTCAAGAC TCGAGCAGTC TGTTGCCTTC ACCTTGTGCT TATGTTGAGG 
    ATAGAGGCTC TGTTGTATTA TCCTGTCACA AGGCCAAGAT GGAAAATTAA 
    TGCTAGTCAA GATGCCACGC AAGAAACTGG CCTGATTGAT GCAGAAATTA 
    ATTCTTATGC CTATAGTGAA AGGAAGAACA GGAAATACAA CGGCGCCTAC 
    ATCGATAAAG ATGGTGTATC AAGGACCTTC GATCGAAAGA AAATATCAAG 
    AAAAAGGGGG GGTGCTATGA GAGGCCGGGG CTGGAAGTAT GGCTCTGGTT 
    TTGTAGATGG AGTCTTCCCT GTGCTCAGTC CAATGGCACA GGATATCTTA 
    GAATTTGTTC AGAAGGGAAC AGACGTTGCA AAAATCTGGG AATCTTTGGA 
    TAACATTCCT TCCACACACA ATCTTTTTGA TGATCTTGTG AATGTCGCTG 
    TCCAATTCCG TATGAACAAG AAATGGGATC TGATCATTCC ATGGATATAG 
    GTCTGCGAGT GGATCCTGTA CAGGAGCTCA TTCCGTCCTG ACATCATCTG 
    CTACAACCTG CTCATAGAAT CCTATGGCAA GAAGCGTCAG CTGAACAAGG 
    CAGAGTCAAT CTACATGGCT CTTCTGGAAG CTCAGTGTGT GCCAACTGAA 
    GACACCTATG CTCTTCTCCT GCGCGCTTAC TGCAACGCTG GATCGCTGCA 
    CCGAGCAGAA GGCGTGATCT CGGAGATGCG CGAGCACGGG ATTCCTCCAA 
    ATGCTACTGT ATATAATGCT TACTTGGATG GATTACTGAA GGCAAGATGT 
    ACCGAAAAGG CGGTCGAGGT GTACCAAAGG ATGAAGAGAG AACGGTGCAG 
    AGCTAACACG GAGACATTCA CCCTGATGAT CAATGTGTAC GGGAAGGCAA 
    AGCAACCAAT GTCATCGATG AAAGTTTTCA ACGAGATGAA GTCGATTGGG 
    TGCAAGCCTA ATATCTGCAC TTACACTGCC CTGGTGAATG CATTTGCGAG 
    GGAAGGCCTG TGCGAGAAGG CTGAAGAAGT GTTCGAGGAG ATGCAGCAGG 
    CAGGGCACGA GCCTGACGTG TATGCTTACA ATGCCCTCAT GGAAGCTTAC 
    AGCCGCGCTG GATTGCCGCA AGGCGCATCG GAGATCTTCT CCTTGATGCA 
    GCACATGGGG TGTGAGCCTG ACAGAGCTTC ATACAACATC TTGGTAGATG 
    CATATGGAAG AGCCGGCCTT CATGAAGATG CGGAGGCGGT GTTCGAGGAG 
    CTGAAGCAGC GGGGGATGTC GCCGACGATG AAGTCCCACA TGCTGCTGCT 
    GGCGGCGCAC GCCAGGTCCG GCAACGCGAC GAGGTGCGAG GAGGTGATGG 
    CGCAGCTGCA CAAGTCCGGC CTCACCCCGG ACACCTTCGC GCTGAACGCC 
    ATGCTCAACG CCTACGCCCG CGCCGGCCGC CTCGACGACA TGGAGCGCCT 
    CTTCGCCGCC ATGGAGCGCC GCGGCGACGC CGACGTGGGC ACGTACAACG 
    TGGCGGTGAA CGCGTACGGG CGCGCCGGGT ACGTGGGGAG GATGGAGGCG 
    GCGTTCGCGG CGGTGGCGGC GAGGGGGCTC GCCGCCGACG TGGTGACGTG 
    GACGGCGAGG ATGGGGGCGT ACGCGAGGAG GAAGGAGTAC GGGCGGTGCG 
    TGGGGATGGT GGAGGAGATG GTGGACGCCG GCTGCTACCC GGACGCCGGC 
    ACGGCGAGGG TGCTGCTGGC GGCGTGCTCC GACGAGCGCC AGGTGGAGCA 
    GGTCACCGCC ATCGTCAGGT CCATGCACAA GAAGCCCAAG ACACTCTTCA 
    CCATATAATA ATAAAAAAAA ACCCAACACT TTGCATATAT AATTGCATTA 
    TTATTACATG TATAATAATA CAGTATAAAT GTACATTACA ATACTACCTT 
    AGTTTTCTTT TAATGTATGC CGCCATTAAT TCTAAAGTAG CGGCTAACCA 
    TTCAAAAAAA AACAAAAAAA AAACG

    Gene models with high sequence identity

    1. AT2G35130.2 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
      E-value: 0; Score: 673.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMTigr Pentatricopeptide repeat 1.2e-05
    HMMTigr Pentatricopeptide repeat 1.9e-08
    HMMTigr Pentatricopeptide repeat 3.9e-07
    HMMTigr Pentatricopeptide repeat 4.3e-07
    HMMTigr Pentatricopeptide repeat 1.2e-10
    HMMTigr Pentatricopeptide repeat 4.5e-09
    HMMTigr Pentatricopeptide repeat 4.2e-09
    HMMTigr Pentatricopeptide repeat 0.012
    HMMTigr Pentatricopeptide repeat 0.0014
    HMMTigr Pentatricopeptide repeat 0.014
    HMMTigr Pentatricopeptide repeat 3.9e-07
    HMMPanther PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1.1e-122
    superfamily TPR-like 3.8e-26
    superfamily TPR-like 1.5e-07
    HMMPfam Pentatricopeptide repeat 0.0056
    HMMPfam Pentatricopeptide repeat 3.7e-05
    HMMPfam Pentatricopeptide repeat 4.4e-05
    HMMPfam Pentatricopeptide repeat 2e-06
    HMMPfam Pentatricopeptide repeat 6.2e-09
    HMMPfam Pentatricopeptide repeat 1.8e-06
    HMMPfam Pentatricopeptide repeat 5.8e-08
    HMMPfam Pentatricopeptide repeat 4.8e-06
    HMMPfam Pentatricopeptide repeat 0.0032
    ProfileScan Pentatricopeptide repeat 10.095
    ProfileScan Pentatricopeptide repeat 12.101
    ProfileScan Pentatricopeptide repeat 10.238
    ProfileScan Pentatricopeptide repeat 11.433
    ProfileScan Pentatricopeptide repeat 13.055
    ProfileScan Pentatricopeptide repeat 12.551
    ProfileScan Pentatricopeptide repeat 13.23
    ProfileScan Pentatricopeptide repeat 10.961
    ProfileScan Pentatricopeptide repeat 7.783
    ProfileScan Pentatricopeptide repeat 9.92
    ProfileScan Pentatricopeptide repeat 5.36
    ProfileScan Pentatricopeptide repeat 6.138

    See the detailed result >

    AT2G35130.2

    Model type
    Protein coding
    Short Description
    Tetratricopeptide repeat (TPR)-like superfamily protein
    Computational Description
    Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT5G02860.1).
    Link
    InterPro Scan - TAIR