K39027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39027

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39027

Determination of introduced cDNA(s)

  • J023041O13 - Rice Full-length cDNAs - Original: J023041O13

    full reading [+] show sequence

    Nucleotide sequence: J023041O13 - full reading 
    GGATCTACCA TGCGCGGTGG ATATCGATTA GGCGTCGTCT CATCGTCTTC 
    CTCCTCGCGT GCGGCGGCGG CGCGCCAGTG GCCGTGACTG ACTCTGCGCC 
    GGCGGCGGCG GCGGCGTGCA CCGGCGAATC CCCTTGCGGG AACGGAGGTC 
    TAAAGCCTCT CCCGCCACCA CTATCCCTTC CTCTTCGGCT CACGCTCCCG 
    TCCCCAATAA CCTCCGCTTT CGTCAGCTCC ATTCTTGCAG GCGTCTCTCC 
    TCGGCTCCGC TCGCTTCGGA CAGTCCGAAG GCTAAGCTTA TACTTGGTGG 
    CGCGGTGCTG CCTGAAGCAG ATGGCTATCT ACACACCTAC TGTCTGTTTA 
    CAACGCTGTA CTTATAGCTT GTATTCTCAG TCTTGTCAGT TACAAGGAGG 
    GCTGACACAG GGCATGGCAT TATGGAAGTA TTCTCGTTCA CAAGCAGTCG 
    GTTATCATGT AAAGATCAGA TTAGTTGGTT TGCCTCCTAA GATGAACATA 
    AAATCACTGC GAACATGTTT TGCCAGTTCG GGGAAACAGT TGTGTGGCAG 
    ACAACCTGCG AGGGATAATA TTCTAAAGCT AAAGCTTGAT GAGCCCTCAC 
    GTCAGAAGTT GTATAGTATT CTCTGGGATT CAAGAAGCAT AGGACACAAA 
    GTTGGAGCTA CAGGCACTGG ACTTTTCCTA AGTTTTGCAG TTCCTGCGAA 
    GGCAAATGCT GAGGGTCCTG TGGACAATAA TACTGATAGC CCCCAAACTA 
    CTGAATCGTC CACTAGTTAT GCTCATGGGA AAAAAGTTTG CACGGATTAT 
    TCTGTTACTG GCATTCCTGG AGATGGAAGG TGCTTGTTCC GATCTGTGGC 
    TCATGGTGCA TGTATTAGGT CAGGTAAGCG ACCTGATGAT GATCTCCAGA 
    GAAAGATGGC TGATGACTTA AGAGCAATGG TCGCCGATGA ATTTATCAAG 
    AGACGGGCAG AGACTGAATG GTTTGTTGAG GGGGACTTCG ATGCATATGT 
    CTCTCGGATT AGGAAGCCAC ATGTGTGGGG AGGTGAACCA GAACTGTTAA 
    TGGCTTCGCA TGTTCTTCGG ATGCCAATTA CTGTGTACAT GCATGATAAG 
    GAAGCTGGTG GTTTAATAGC AATTGCAGAA TATGGTCAGG AGTACGGGAA 
    AGAAGATCCA ATTCAAGTTC TTTTTCATGG TTTTGGCCAT TATGACGCTC 
    TACAGATACC AGGAAAGGGT GGTCCAAGGT CAAGGCTGTA ACATTTGGAG 
    CTCAGATTCC AAACAGTAAG TTTTGAACCA ACCTTTGTTT CCCTTTCTTT 
    TCCCAGTACG CTTGCTGTCC AAATGTAACC AGAATCTACC CTCAACAAAT 
    TTAAAATGCT GCGATGTTCC AAGTTCC

    Gene models with high sequence identity

    1. AT3G57810.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 8e-65; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ovarian tumour, otubain 14.766
    HMMPfam Ovarian tumour, otubain 1.2e-22
    superfamily Cysteine proteinases 4.4e-18
    HMMPanther OTU DOMAIN CONTAINING PROTEIN 1.4e-16

    See the detailed result >

    AT3G57810.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 631 Blast hits to 631 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR