K39027

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39027

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39027

Determination of introduced cDNA(s)

  • J023041O13 - Rice Full-length cDNAs - Original: J023041O13

    full reading [+] show sequence

    Nucleotide sequence: J023041O13 - full reading
    GGATCTACCA TGCGCGGTGG ATATCGATTA GGCGTCGTCT CATCGTCTTC 
    CTCCTCGCGT GCGGCGGCGG CGCGCCAGTG GCCGTGACTG ACTCTGCGCC
    GGCGGCGGCG GCGGCGTGCA CCGGCGAATC CCCTTGCGGG AACGGAGGTC
    TAAAGCCTCT CCCGCCACCA CTATCCCTTC CTCTTCGGCT CACGCTCCCG
    TCCCCAATAA CCTCCGCTTT CGTCAGCTCC ATTCTTGCAG GCGTCTCTCC
    TCGGCTCCGC TCGCTTCGGA CAGTCCGAAG GCTAAGCTTA TACTTGGTGG
    CGCGGTGCTG CCTGAAGCAG ATGGCTATCT ACACACCTAC TGTCTGTTTA
    CAACGCTGTA CTTATAGCTT GTATTCTCAG TCTTGTCAGT TACAAGGAGG
    GCTGACACAG GGCATGGCAT TATGGAAGTA TTCTCGTTCA CAAGCAGTCG
    GTTATCATGT AAAGATCAGA TTAGTTGGTT TGCCTCCTAA GATGAACATA
    AAATCACTGC GAACATGTTT TGCCAGTTCG GGGAAACAGT TGTGTGGCAG
    ACAACCTGCG AGGGATAATA TTCTAAAGCT AAAGCTTGAT GAGCCCTCAC
    GTCAGAAGTT GTATAGTATT CTCTGGGATT CAAGAAGCAT AGGACACAAA
    GTTGGAGCTA CAGGCACTGG ACTTTTCCTA AGTTTTGCAG TTCCTGCGAA
    GGCAAATGCT GAGGGTCCTG TGGACAATAA TACTGATAGC CCCCAAACTA
    CTGAATCGTC CACTAGTTAT GCTCATGGGA AAAAAGTTTG CACGGATTAT
    TCTGTTACTG GCATTCCTGG AGATGGAAGG TGCTTGTTCC GATCTGTGGC
    TCATGGTGCA TGTATTAGGT CAGGTAAGCG ACCTGATGAT GATCTCCAGA
    GAAAGATGGC TGATGACTTA AGAGCAATGG TCGCCGATGA ATTTATCAAG
    AGACGGGCAG AGACTGAATG GTTTGTTGAG GGGGACTTCG ATGCATATGT
    CTCTCGGATT AGGAAGCCAC ATGTGTGGGG AGGTGAACCA GAACTGTTAA
    TGGCTTCGCA TGTTCTTCGG ATGCCAATTA CTGTGTACAT GCATGATAAG
    GAAGCTGGTG GTTTAATAGC AATTGCAGAA TATGGTCAGG AGTACGGGAA
    AGAAGATCCA ATTCAAGTTC TTTTTCATGG TTTTGGCCAT TATGACGCTC
    TACAGATACC AGGAAAGGGT GGTCCAAGGT CAAGGCTGTA ACATTTGGAG
    CTCAGATTCC AAACAGTAAG TTTTGAACCA ACCTTTGTTT CCCTTTCTTT
    TCCCAGTACG CTTGCTGTCC AAATGTAACC AGAATCTACC CTCAACAAAT
    TTAAAATGCT GCGATGTTCC AAGTTCC

    Gene models with high sequence identity

    1. AT3G57810.1 [+] show detail - Cysteine proteinases superfamily protein
      E-value: 8e-65; Score: 244.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan Ovarian tumour, otubain 14.766
    HMMPfam Ovarian tumour, otubain 1.2e-22
    superfamily Cysteine proteinases 4.4e-18
    HMMPanther OTU DOMAIN CONTAINING PROTEIN 1.4e-16

    See the detailed result >

    AT3G57810.1

    Model type
    Protein coding
    Short Description
    Cysteine proteinases superfamily protein
    Computational Description
    Cysteine proteinases superfamily protein; CONTAINS InterPro DOMAIN/s: Ovarian tumour, otubain (InterPro:IPR003323); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G38025.1); Has 631 Blast hits to 631 proteins in 129 species: Archae - 0; Bacteria - 0; Metazoa - 270; Fungi - 54; Plants - 235; Viruses - 0; Other Eukaryotes - 72 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR