K39107

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39107

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39107

Determination of introduced cDNA(s)

  • J013124K14 - Rice Full-length cDNAs - Original: J013124K14

    full reading [+] show sequence

    Nucleotide sequence: J013124K14 - full reading
    GTTTTTTCCT CCACCGATGG CTCTTTCCAC GAGTCTCCTC TCCTGGTCCT 
    CCTCCGACGA CGACGACGGC GCCGGCGCCG GCGGCGAGCT GTCCCGCCCT
    CGCAGGCGGT GGCGGGCGCT TGTCCTGGGG CTCGGGGTGA GGAGGAAGAG
    GAGCATGGAG GGGGTGTTCG GGTTCAGGGA GATGATGGGG GAGGAGTTCA
    TGGGCATGTT CCTCCCCTTC TTTGGCAAGA TGGTTCAGAA AGTGGTTTCA
    GAAGAAGTAG AGAAAGCAAT TTTCAGACAA GTCAGCACAC CAGCGCCTCC
    AAGACTGCTA GCAGGATTGA ATCAGCAGCG TCCAAGGTAT CAACTCGTGT
    TCCTGAATGA ACTAAAGCCT GTTTACACAC TGATGAAATT AGAAGCCAAG
    GATGGACCGG GTCTTAAGGT GGCTATAGTC GAAAGACTCG AAAACAATCA
    GATGCGCATC GTCAGGTTCG GTCATCTTGC TTCTGCTAAG GTTGAAGTTG
    TAGTCCTCCA CGGCAACTTT AATGCTAAAA ATGAGGAACA ATGGACCCCT
    GAAGACTTCA GCAAGCAGAT AGTATGCGGG CGAGAGAAAA GCGCACAACT
    TCTCACCGGA AATCTGACAC TGAAGCCCAA TGGAGGGATT TGAAAAGCAC
    TACCCGCCAA TGTTGGATGA CGAAGTTTGG CGTTTGGAAA AGATCGGCCG
    CAATGGAGCT CACCACCAGG CCTTGACAAA CAGTGGAGTT GATACTGTAC
    AGAAGTTCTT ACAATCATAT TTTACGGACG AAAAGAAGCT TTTTCAGACT
    TTTAGCAAGA TGTCACAGGC AGCTTGGAAA ACCATCATAA GCCATGCCAT
    GACATGTGAA GTCGGTGACG ATCTTTGCTT GTATGAAGTG AAGGGCAACA
    ACGTGGGACT TTTCTTCGAT GCAATATATC AGCTTGTTGG GGTGAAGTTT
    GGTGATTCTT ACAAGCCCAT AAATGAGCTC GACGAAATAG AGCAGAGTGC
    AGTTGAAACA ATGAAGCAAT TGGCTTATGC GAATATAAGT GGTATTCAGT
    ATGACCATAA GGTGGTCAAC AACTATCCTG TACCGCTTCA TAGGTTCCAT
    TGTGGGGGAA CTTCTATGTT GACTGACTTT ATTCCTAAAC AGCAGATCCC
    AACTTGTGGT CAATACAATT CAGCCCTGGC TGGTCAACCA TTTGAATCAA
    CGGAGAACTT TTCTTCATTC CAAGAAGCCT CTAATGCTTC AGTGGATATG
    TCAAGATTTG TGCAGGGTCA AACCTCCAAC GTGCAGTTTA GCCAACAGTT
    GGGCATGGGC AATTTTATCC CACATCATTC AAATCAAGGA ACATTCATAC
    CCAGACCAAG AATCACTCCT CTGTGTATAC CTAATACCGA AAAAACATAT
    TTTAATCCAA ACGCTCATAG CAGCATCCAG GCTGATCATG CTGCCACACG
    AATTGGCCAG TATGCACATA ATGAGCGATC TCATTCACCT GAAGAATCAT
    ACAAGCGCTT TTCTCCAGAT AATTTCCTCC ATACAGATGA AGTTGTGGCT
    TTGATGCAAC CTCACTTAGT GCCTCCGAGC AACAGCGAGA ATTTCAGTAA
    CCTGCTCAAC CTATCAAGCA ATGACCAAAC CTCACAGCAA ATTGCCGCTC
    CATTCCAGCC ATCAAGAACA AACAGCTTTG ACTCCAGCTC ATGTGATCAG
    CTCATACAGA ATTTCATTTC TCAGTTTTCT AGCAACGAAA GAGTTGCGGT
    GCCATTGTCC CCACGCAAGT GGGTCAAGAT CAGGGCAGCG CTGAAGCTGG
    CATCTGTGGG TAGGCTCTCC AGAGCCTCGA GAAAGGCTTC GCATCGCCCC
    CCAGCAAGGC CAAGGCTTGT CCCAATAGTA TGAGCCTGGT GAAAACAGGT
    TGTAAAAAAT TTAGATTAAA GATCGATCTT GGTGTTGATG CAGAAGTTCT
    AGAGACATCT GGTCAACTGA AACTAATGAT TTTGTCAAAA AGTTAGGTGT
    ATGTAATCTG TACATAGTAG AGCCTGCTTG TACTTCATTT AGTGTTAGTA
    TTTCCCAGCA GAGGATTCTG ACCTCTTTGT TATCTCTGAA TTTAGAACCA
    TGTAAACAAA AAGACCATGT AATGTATTCC TTTTTTGCAC CTAATGATCC
    TTGAGAGAAA TTTCCTTTT

    Gene models with high sequence identity

    1. AT5G57580.1 [+] show detail - Calmodulin-binding protein
      E-value: 7e-24; Score: 109.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Calmodulin binding protein-like 2.1e-28
    HMMPfam Calmodulin binding protein-like 2.5e-53

    See the detailed result >

    AT5G57580.1

    Model type
    Protein coding
    Short Description
    Calmodulin-binding protein
    Computational Description
    Calmodulin-binding protein; CONTAINS InterPro DOMAIN/s: Calmodulin binding protein-like (InterPro:IPR012416); BEST Arabidopsis thaliana protein match is: Calmodulin-binding protein (TAIR:AT4G25800.2); Has 341 Blast hits to 322 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR