K39113

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39113

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39113

Determination of introduced cDNA(s)

  • J033072E15 - Rice Full-length cDNAs - Original: J033072E15

    full reading [+] show sequence

    Nucleotide sequence: J033072E15 - full reading 
    GAATCTGAAT TTGACCAGCA TGCATGCTCA GCGTCGTTGC CGTGTAGATA 
    TTCCCCATCA GATCACTCGC TCTCCTCTTA TTCCTTGTCC CAACTCCAAC 
    TGCAGAGGAA GCTACCAGCA ATTCTCGTCT CCATGCGTCC CCAGAGCTAT 
    GCATTTCTTG GCCTTGTTCT TCTCCTCTTC TCCCTGCTTC CTCTTGCTCC 
    ATGCTCTGCT GCAAATCTAA ATAATGATAC TCTCCTGGCT GGCCAAGCGC 
    TCGCCGTCGG TGACAAGCTC ATCTCGAACA ACGGCAAGTT CACCCTCGGC 
    TTCTTCCAGC CAGACGCAGG CACCAGTAAG TCATCTGATA CTAGCACCAA 
    TTCCCCTGGC TGGTACCTTG GCATATGGTT CAATAAGATC CCAGTTTTTA 
    CTACTGTATG GGTTGCCAAC AGGGAGAGGC CAATCACTAT CCCTGAGCTC 
    AATCTAACAC AGCTCAAATT CTCATCAGAT GGCAATCTTG TCATCTTTAA 
    CCATGCCACT GAATCCATAA TCTGGTCCAC TCGCGTTATT ATCGATAGTC 
    ATAGGACACA AGAAACCAGC AGCACGAACA CGAGTGTCGT TCTATTGAAC 
    ACCGGAAACC TTGTGATAGA AAGCACAACA AATGTAGTGT TGTGGGAAAG 
    CTTTGACTCC CCAACAGATG TTGTGCTCCC TGGTGCCAAG TTTGGTTGGA 
    ACAAGATCAC TGGCCTGAAC CGTCAATGCA TCTCAAAGAA GAGCTTGATA 
    GATCCAGGTC TTGGCTCATA CAGTGTTGAA CTAGACACTA ATGGTACCAA 
    GGGGGTGATC CTCATGCTCC GCAACCCTCC TAAAGTGTAT TGGTATGGTC 
    TAACATCACC AACTCTTATA CCAGAGCTCA GATCCCTGCT AGCAATGGAT 
    CCACGGACGA GAGGTTTGAT CATCCCTACA TATGTTGATA ACAGCCAAGA 
    GGAGTACTAC ATGTACACTT TATCCAACGA ATCGCCTTCT TCGTTCCTCT 
    CACTGGACAT GTCTGGTCAG ATCATGCTCA ATGTATGGTC AGAAGCTAAC 
    CAGTCTTGGC AAATCATATA TGCCCAGCCT GCTGATCCCT GCAACCCATT 
    TGCTACATGT GGACCTTTTA CCATCTGCAA CGGCAATTCA AATCCAGTAT 
    GTGAATGTAT GGAGAGTTTT ACTCGAAAGT CGTCTCAGGA TTGGGACCTT 
    GGTGATCGGA CAGGAGGATG CTCCAGAAAT ACTCCATTAG ATTGCACTAT 
    TAGCGGTAAC AGGACAAGTT CAGCAGACAT GTTCCACCCT ATAGCTCATG 
    TTAAATTGCC CTATGACTCT GAAAGCATAC AAGATGCCAC CACTCAGAGC 
    AAATGTGCAC AAGCCTGTCT CAGTTCCTGC TCATGCACTG CTTACTCCTA 
    TCAGAACAAC ATATGCTCTG TCTGGCATGG GGATTTGTTT AGTGTAAATC 
    AGAATGATGG CATTGAAAAT CATTTCGATG ATGTTCTTTA CCTCCGCCTT 
    GCAGCCAAAG ATTTGCAAAG TTTGAGCAAA AACAAAAGAA AACCAATTGT 
    TGGAGTTGTT ACAACCATAA GCATTATTAT TCTTGTGTTA CTAATAATGC 
    TCATGGTGTT GGTAATGGTT TGGAGGAATA GATTCAAGTG GTGTGGTGTG 
    CCATTACACA GAAGCCAAGG TGGTAGTGGA ATTATAGCCT TCAGATATAG 
    TGATTTAGAC CATGCTACTA AAAATTTCTC AGAGAAGTTG GGAGAAGGAG 
    GTTTCGGCTC CGTGTTTAAG GGAGTGTTGA GGGACTTGAC TGTTGTAGCA 
    GTGAAAAGGC TTGATGGTGC CCGTCAAGGC GAGAAGCAGT TCAGGGCTGA 
    GGTGAGCTCA ATCGGATTGA TCCAACATAT CAACCTAGTC AAGTTGATTG 
    GTTTCTGCTG CCAAGGTGAC AAGAGGCTAC TTGTTTATGA ACACATGTTA 
    AACGGTTCTC TTGATACCCA TCTGTTTCAG AGCAATGCTA CTATACTGAC 
    GTGGAGCACG AGGTATCAAA TAGCCATAGG AGTTGCTAGA GGACTTTCCT 
    ACTTGCATCA GAGTTGCCAC GAATGCATCA TACACTGTGA TATTAAGCCA 
    CAAAACATAC TTCTCGACGA ATCATTTACT CCTAAAATTG CAGATTTTGG 
    GATGGCAGTA TTTGTAGGAG GGGATTTTAG CAGAGTTCTG ACTACATTTA 
    GAGGAACAGT TGGATATCTT GCCCCGGAGT GGATTAGTGG TGTCGCAATT 
    ACACCAAAAG TTGATGTTTA CAGCTATGGT ATGGTGTTGC TAGAGGTCAT 
    ATCAGGAATG AGAAGTTTAC CTAATGTACA CAGTAGCAAC AGTCATCATG 
    CTGCTTACTT CCCTGTGCAA GCCATCAGCA AGCTTCATGA GGGAGATGTG 
    CAGAGTTTGG TGGATCCACG TTTGAGTGGC GACTTCAATT TAGAAGAGGC 
    TGAAAGGGTT TGCAAAGTTG CTTGTTGGTG CATTCAAGAT AATGAGTTCG 
    ATCGGCCGAC AATGGGTGAA GTGGTCCTGG TTCTTGAAGG TCTACAGGAG 
    TTTGATATGC CCCCTATGCC AAGACTACTT GCAGCTATAA CGAGATCTTC 
    TAATGTAGCT GAGATGTAAA AACAATTCAA AATCCTCTAA TTGCTAAAAT 
    GTACTGTATA ATGCTACTCT TGTATTTACA TTTTTTTTTC TTTAATGACA 
    GACTTTTGTA AGCAACGGTT GTCGATGCAC AGTGAGAAAT GTGTTTTTTG 
    TTGACGGT

    Gene models with high sequence identity

    1. AT2G19130.1 [+] show detail - S-locus lectin protein kinase family protein
      E-value: 5e-167; Score: 585.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Curculin-like (mannose-binding) lectin 2.5e-21
    HMMSmart Apple-like 0.00008
    HMMSmart Serine/threonine-protein kinase domain 9.6e-32
    HMMSmart Tyrosine-protein kinase, catalytic domain 6.1e-24
    superfamily Protein kinase-like domain 9.2e-77
    superfamily Curculin-like (mannose-binding) lectin 1e-27
    HMMPfam Serine/threonine-protein kinase-like domain 3e-47
    HMMPfam Curculin-like (mannose-binding) lectin 5.3e-31
    HMMPfam S-locus glycoprotein 1.3e-20
    HMMPfam PAN-2 domain 5.3e-17
    Gene3D no description 1.3e-20
    Gene3D no description 5.4e-51
    ProfileScan Protein kinase, catalytic domain 35.481
    ProfileScan Curculin-like (mannose-binding) lectin 15.778
    ProfileScan Apple-like 9.964
    PatternScan Protein kinase, ATP binding site 0
    PatternScan Serine/threonine-protein kinase, active site 0
    HMMPanther S-RECEPTOR KINASE 2.7e-205
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 2.7e-205

    See the detailed result >

    AT2G19130.1

    Model type
    Protein coding
    Short Description
    S-locus lectin protein kinase family protein
    Computational Description
    S-locus lectin protein kinase family protein; FUNCTIONS IN: protein serine/threonine kinase activity, sugar binding, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation, recognition of pollen; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Curculin-like (mannose-binding) lectin (InterPro:IPR001480), Protein kinase, ATP binding site (InterPro:IPR017441), Apple-like (InterPro:IPR003609), PAN-1 domain (InterPro:IPR003014), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase, catalytic domain (InterPro:IPR000719), S-locus glycoprotein (InterPro:IPR000858), EGF-like (InterPro:IPR006210); BEST Arabidopsis thaliana protein match is: receptor-like protein kinase 4 (TAIR:AT4G00340.1); Has 116366 Blast hits to 114909 proteins in 4332 species: Archae - 99; Bacteria - 12770; Metazoa - 42761; Fungi - 9470; Plants - 34242; Viruses - 402; Other Eukaryotes - 16622 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR