K39131

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39131

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39131

Determination of introduced cDNA(s)

  • J033128J19 - Rice Full-length cDNAs - Original: J033128J19

    full reading [+] show sequence

    Nucleotide sequence: J033128J19 - full reading 
    GAGCCGCCGC CACGTGCCGC ATTGATGGTC CCGGCAACCA TCCAGCGCGT 
    AACCGATTCC CTGTACATTC GGCCGCGATA ACTATCTCTT TCTCCCCTAT 
    AATTAATCTC GCCGGAGTCC TCGCCGCGAA CCCACCACCA CTGCAATCTC 
    GCCCCGCCGC ACGCACTCCA CTAGCTACCA TCTTGAATTC TTGATTGCTC 
    GGCCGGCACA GCTATGTCGC GCGCCGTAGT TGTGGTGGTG GTGGTGGCCG 
    TGCTGGCGCT GGCGTGCGGC GCGGCGTCGC AGTCGCCGGC GCCGGCGCCG 
    GCGGCGGGGC CGGCGTCGGA CTGCGGGTCG TCGATCACGG CGCTGGCGGG 
    GTGCCTGACG TACATCACGC CGGGGAGCCC CGAGGCGAGG CCGGCCAAGG 
    ACTGCTGCGC CGGCGTGAAG AGCGCGCTGG GCAGCCCGGC CGCCGTCGCC 
    TGCCTCTGCG GCGCGCTCGG CCAGGACTTC GGCATCAAGA TCAACTACAC 
    CCGCGCCGCC GCCCTCCCCG CCGCCTGCGG CGGCGACTCC TCCGCCCTGA 
    GCAAGTGCAA CAAGAAATTT CCCGGTGCCT CTCCTACTGG AGCACCCGCA 
    CCATCTTCTT CCGGTTCTGG GTCAGGATCA ACACCGGCCA CCGGCACGCC 
    ATCTTCACCG AAGTCGGCGG CGGCCCAATC TCCGGTCTCG GCGATGCTCA 
    TTGTAGCCAC GGTTGCTGCA CCTCTGCTTT CTTACTATTA CCTCTGAAGA 
    TTTTTACCAC ATATGATCTA GTTTCTGAAA CGCTGTGATT TGTATGCGCA 
    TTGCGCTGTG ATTTATCAGT GACTCTTTTA GGGAGAGATC TGCTAATGTT 
    GACTTCTATA GCCGTGCCCG TGGTGCCATT TCTCACTGTT TCCTGGATTG 
    CTATTAGTTT GTACAATATT GGGATGGTTC ATTCAGAATA AAGTAGAAAA 
    ATGAAGC

    Gene models with high sequence identity

    1. AT5G64080.2 [+] show detail - Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
      E-value: 0.0000001; Score: 54.30

     

    InterPro Scan Digest

    Program Description E-value
    HMMSmart Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor 0.00024
    FPrintScan Plant lipid transfer protein/Par allergen 0.000000063
    FPrintScan Plant lipid transfer protein/Par allergen 0.000000063
    FPrintScan Plant lipid transfer protein/Par allergen 0.000000063
    Gene3D Plant lipid transfer protein/hydrophobic protein, helical domain 0.00096
    superfamily Bifunctional inhibitor/plant lipid transfer protein/seed storage 8.6e-17

    See the detailed result >

    AT5G64080.2

    Model type
    Protein coding
    Short Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
    Computational Description
    Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein; FUNCTIONS IN: lipid binding; INVOLVED IN: lipid transport; LOCATED IN: anchored to plasma membrane, anchored to membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Bifunctional inhibitor/plant lipid transfer protein/seed storage (InterPro:IPR016140), Plant lipid transfer protein/seed storage/trypsin-alpha amylase inhibitor (InterPro:IPR003612), Plant lipid transfer protein/Par allergen (InterPro:IPR000528), Plant lipid transfer protein/hydrophobic protein, helical domain (InterPro:IPR013770); BEST Arabidopsis thaliana protein match is: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein (TAIR:AT2G13820.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR