K39212

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39212

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39212

Determination of introduced cDNA(s)

  • J013047G22 - Rice Full-length cDNAs - Original: J013047G22

    full reading [+] show sequence

    Nucleotide sequence: J013047G22 - full reading 
    GAGTTTGTCA TGATCACCAC CACACTGACA AGAAGAATAT AGCATGTTAT 
    TCTACTCATT CTCCACTTGT GAGTTCTGAC TTATCTGCAC ATTGGTGAGA 
    CAGTCAATGA GTGCAGATGA GACTGCAGAG ATTAACCCTG TCTTGTCCAG 
    AGAATAATCT TTGATTTCAG AGCATCTTGC CACTCAAATA TCTCGCATAC 
    ATACATAAGA TTCGCTCGCA TGATCTGAGC TGTTTTGTCT GAATTTCTGA 
    ATGCAGCTGA GGCAGAAATC GGTGAGAGTG GTAGGTGTTT GTTGCGATCG 
    TTGAAGCATG AAGAGCAGCA GCCAAGAAGC GGGAGAGGAG GTGTCCGAGA 
    TCAGCAGCCA GGCGGCGTCC AACAACAACG AGACGTGCAA CTCCTCCTCC 
    GGTAAGGTCA GCCTCGACCT GTCGCTCACC GTCGCCGCCG CCGCCGCGGC 
    GGCTGCCTCC GCCACCGAGT CGAGCACCAC GGACAGCGGC GGCACGCGGC 
    CGGCGGCGAC GGCGACGGCG ACGGCGCGCG AGCCGGCGCG GGTGTTCACG 
    TGCAACTACT GCCAGAGGAA GTTCTTCAGC TCGCAGGCGC TGGGCGGGCA 
    CCAGAACGCG CACCGGCGGG AGCGCACGCT GGCCCGGCGC GCCGTGCGGC 
    TCGACGCGTT CCCCTACGGC TACGCCGACG TGGCCTCGCT GCCGCTGTAC 
    GGCGCCGGCC TGTACCCCAT CGGCATCCAG GCGCACGCGT CGGTGCACCA 
    CCACCACCCT GGCGTGGCGG CGCCGGCGGG GCGCGCCGAG TTGAGGTCGG 
    CGCGCGCGCT GCTCGGCCCG ATGCCGTTCT TCGTGCAGGC GGCAGGCGAT 
    GAGGATGCCA GCTTCGGGTG GCCGGGCAGC TTCAGGCCAC CGCCCACCGC 
    CGCCACCACC ATCCCCGCCG CCGCCGCCGC CCCGGTCGCC GTCAACTCCG 
    GCTCCTCCAA CTCCAACCAC GGCGGCAGCG TCGTCGTGCA GGCCGCCGCC 
    GACGAGCCCG ACCTCACACT TAGACTCTAG CTGTCCCATC CATCCATCCA 
    TTAGTCTGGT GTAACATTCA TCAGGTTGCT CCTGATCATC TCCTCCGTTT 
    GTGAGTAGAA TTCTTGCTTG CTTGCTTGCT TCGCTCTCGA TCCTGCTGCT 
    TGAGCTTGAC ATCAACCAAC CTGCTAGTAA ATTACTATTG CTTCAAATGC 
    ATGCGTGGAA GTATTGTTTT TGTAAATACA GCTTAGCCTA TCCTAATATG 
    ATTGTACTTG TGCCCTAAGC

    Gene models with high sequence identity

    1. AT1G66140.1 [+] show detail - zinc finger protein 4
      E-value: 0.0000004; Score: 53.10

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Zinc finger, C2H2-type 0
    superfamily C2H2 and C2HC zinc fingers 0.0000013
    ProfileScan Zinc finger, C2H2-type 11.323

    See the detailed result >

    AT1G66140.1

    Model type
    Protein coding
    Short Description
    zinc finger protein 4
    Curator Summary
    Encodes a zinc finger protein containing only a single zinc finger.
    Computational Description
    zinc finger protein 4 (ZFP4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein 7 (TAIR:AT1G24625.1); Has 1119 Blast hits to 1118 proteins in 50 species: Archae - 0; Bacteria - 0; Metazoa - 7; Fungi - 4; Plants - 1103; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR