K39215

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39215

Determination of introduced cDNA(s)

  • J013129C16 - Rice Full-length cDNAs - Original: J013129C16

    full reading [+] show sequence

    Nucleotide sequence: J013129C16 - full reading
    GGAGGGGCTT TTTCGCAAAA CAACGTCAAC TAACCCACAC ACACCACCCT 
    CAAACCCTAG CCGCCGCCGC CGACTCCCCC TCGCGCCGTC CCCGTCGCCG
    AGCGCCGCCG CCTCCGTCAA GCCCAAGCCC AGTAGTCCAC TCCCAGGCAG
    CTCTCCCCTC TCGCCGCCAT GGCGGATGTG GAGGCCTGCC TCCTCGCCCA
    CCTCAACTCC GGCGGCGAGG TGCCGGACTC CCGCTCCTAC GCCTCCTCCC
    TCCGCGTCAC CCACGACGAG CTCGAGGCCG TCATCAAGAG CCTCTCGGCT
    TTCCGCATTG TCGACACCAC GGACATCACC AAGGAGACGT GGGTGCTAAC
    CGATGAAGCT AAGGGGTACG TCGCGGGTGG CTCCCCCGAA GCGCAGCTCG
    TCGCTGCAAT CCCACCGGAG GGTGCCTCCA AGGACGTGCT CAGGGAGAAA
    TTGGGATCTG TCTTTGACAT CGGCATGAAG ACGGCTGCGA AGAACAAGTG
    GATTGGTTTT GAGAAAGGGA ATAAGGACTT GGTGTTGAGA AAGGTTAACA
    CCATCAAGGA TGACTTGCAA GAGCAACTGA AAAGTCTAGA GAGTGGAGAG
    GTTCTTTCTG ACAAGGTGAT TGATGATTTG AAAAGAAGAA AGCTTATCAC
    AAAAGAGAAA TCAATTTGGT ATGCCCTAAA GAAAGGACCC CAGTTTGTCG
    CGAAGAGGAA AAAACTGGCA ACTGATGTGA CACAAGAGCA TCTCAGAAGT
    GGTGATTGGA AGGATCTTGA ATTCAAAGAC TATAACTTTG GAGCCCAGGG
    ACAACCTATT GCCATTGGTT ATGTGCAACC TTTGTTGGAG GTGCGAGAGG
    AAATCCAGAA CATCTTTCTT CAGATGGGGT TCACTGAGAT GCCAACTAAC
    AATTACGTTG AGAGCAGCTT CTGGAACTTC GATGCACTGT TCCAGCCCCA
    ACAGCATCCT GCTCGGGATT CACACGATAC ATTTTTTCTT GAAGCCCCTG
    CCGCTACAAA ACAATTGCCT GAAGATTATC TTGAGAAAGT AAAGGAAGTT
    CATCAACGTG GTGGTTATGG CTCCAAGGGA TATGGCTATG ACTGGAAACG
    GGATGAAGCA GAGAAAAACC TGCTTCGTAC CCACACTACA GCAGTTTCAA
    CAAGGATGCT ATACAAGCTA GCACAAGAGA AACCTTTTGC CCCTAAGAGG
    TACTACTCCA TTGATCGTGT TTTCCGCAAT GAAGCTGTGG ACCGGACTCA
    TCTTGCGGAA TTCCACCAGA TTGAAGGTCT CATTTGTGAT TATGGTTTGA
    CGCTGGGTGA TCTGATTGGT GTATTGGAGG ATTTCTTCTC GAGTCTAGGC
    ATGTCAAAGC TGCGTTTCAA GCCTGCCTAC AATCCATACA CCGAGCCGAG
    CATGGAAATT TTCAGTTACC ATGAAGGTTT GAAGAAATGG GTGGAAGTTG
    GTAACTCTGG CATGTTCAGA CCTGAAATGT TACTTCCCAT GGGACTGCCA
    GAGGGTGTTA ATGTTATTGC ATGGGGTCTT TCACTAGAAA GGCCAACAAT
    GATTCTTTAC GGCATCGACA ACATTCGAGA CCTCTTTGGA CCAAAGGTTG
    ATTTCAACCT CATCAAGAGC AACCCTCTCT GCCGCTTGGG ACTGCAGTAA
    AACCTTGCAA AAGTTGGTTG GAAGTGATTA AGTAACAAGA TTTGTTTAGT
    TGATCAGTGG TTGAACGTGA AGAGATCATT TCTGGCTTAC CTTGAAACAC
    CAATACATGT GCATTTAGCA GAGGTTTTTG TATTACAGTT TTGAGTGATA
    TGAGACTACC AGCCAATTTT TGTGTGTGTC CATATTCGAA TACTTTGATA
    CATTTTAATT GAGCACATCC AATGTATGAA GTGGTCATCT GCCGCTGCGG
    TTGCTTGAAT CAAAATATGG ACCATTGTTT TCTTTTCTTT GACAAACTTG
    GCGCTCCAAA AACTGTTGTT GAGAAGTGTC ATCAAACAGG ATGTAATAGT
    TATGATACTG ATCTAAGATT AATAATATCT GCTGAAGCTG ATGCCTTTCA
    CACCTC

    Gene models with high sequence identity

    1. AT4G39280.1 [+] show detail - phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
      E-value: 0; Score: 662.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF55681 7e-71
    HMMPanther PTHR11538:SF15 0
    HMMPanther Phenylalanyl-tRNA synthetase alpha chain 0
    Gene3D G3DSA:3.30.930.10 2.70001369379065e-101
    HMMTigr Phenylalanyl-tRNA synthetase, class IIc, alpha subunit 4.40002866058555e-109
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 0
    HMMPfam Phenylalanyl-tRNA synthetase alpha chain 4.59999999999996e-88

    See the detailed result >

    AT4G39280.1

    Model type
    Protein coding
    Short Description
    phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
    Computational Description
    phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative; FUNCTIONS IN: phenylalanine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR004529), Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1); Has 10138 Blast hits to 10129 proteins in 3092 species: Archae - 343; Bacteria - 6159; Metazoa - 288; Fungi - 276; Plants - 100; Viruses - 0; Other Eukaryotes - 2972 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR