K39215

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39215

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39215

Determination of introduced cDNA(s)

  • J013129C16 - Rice Full-length cDNAs - Original: J013129C16

    full reading [+] show sequence

    Nucleotide sequence: J013129C16 - full reading 
    GGAGGGGCTT TTTCGCAAAA CAACGTCAAC TAACCCACAC ACACCACCCT 
    CAAACCCTAG CCGCCGCCGC CGACTCCCCC TCGCGCCGTC CCCGTCGCCG 
    AGCGCCGCCG CCTCCGTCAA GCCCAAGCCC AGTAGTCCAC TCCCAGGCAG 
    CTCTCCCCTC TCGCCGCCAT GGCGGATGTG GAGGCCTGCC TCCTCGCCCA 
    CCTCAACTCC GGCGGCGAGG TGCCGGACTC CCGCTCCTAC GCCTCCTCCC 
    TCCGCGTCAC CCACGACGAG CTCGAGGCCG TCATCAAGAG CCTCTCGGCT 
    TTCCGCATTG TCGACACCAC GGACATCACC AAGGAGACGT GGGTGCTAAC 
    CGATGAAGCT AAGGGGTACG TCGCGGGTGG CTCCCCCGAA GCGCAGCTCG 
    TCGCTGCAAT CCCACCGGAG GGTGCCTCCA AGGACGTGCT CAGGGAGAAA 
    TTGGGATCTG TCTTTGACAT CGGCATGAAG ACGGCTGCGA AGAACAAGTG 
    GATTGGTTTT GAGAAAGGGA ATAAGGACTT GGTGTTGAGA AAGGTTAACA 
    CCATCAAGGA TGACTTGCAA GAGCAACTGA AAAGTCTAGA GAGTGGAGAG 
    GTTCTTTCTG ACAAGGTGAT TGATGATTTG AAAAGAAGAA AGCTTATCAC 
    AAAAGAGAAA TCAATTTGGT ATGCCCTAAA GAAAGGACCC CAGTTTGTCG 
    CGAAGAGGAA AAAACTGGCA ACTGATGTGA CACAAGAGCA TCTCAGAAGT 
    GGTGATTGGA AGGATCTTGA ATTCAAAGAC TATAACTTTG GAGCCCAGGG 
    ACAACCTATT GCCATTGGTT ATGTGCAACC TTTGTTGGAG GTGCGAGAGG 
    AAATCCAGAA CATCTTTCTT CAGATGGGGT TCACTGAGAT GCCAACTAAC 
    AATTACGTTG AGAGCAGCTT CTGGAACTTC GATGCACTGT TCCAGCCCCA 
    ACAGCATCCT GCTCGGGATT CACACGATAC ATTTTTTCTT GAAGCCCCTG 
    CCGCTACAAA ACAATTGCCT GAAGATTATC TTGAGAAAGT AAAGGAAGTT 
    CATCAACGTG GTGGTTATGG CTCCAAGGGA TATGGCTATG ACTGGAAACG 
    GGATGAAGCA GAGAAAAACC TGCTTCGTAC CCACACTACA GCAGTTTCAA 
    CAAGGATGCT ATACAAGCTA GCACAAGAGA AACCTTTTGC CCCTAAGAGG 
    TACTACTCCA TTGATCGTGT TTTCCGCAAT GAAGCTGTGG ACCGGACTCA 
    TCTTGCGGAA TTCCACCAGA TTGAAGGTCT CATTTGTGAT TATGGTTTGA 
    CGCTGGGTGA TCTGATTGGT GTATTGGAGG ATTTCTTCTC GAGTCTAGGC 
    ATGTCAAAGC TGCGTTTCAA GCCTGCCTAC AATCCATACA CCGAGCCGAG 
    CATGGAAATT TTCAGTTACC ATGAAGGTTT GAAGAAATGG GTGGAAGTTG 
    GTAACTCTGG CATGTTCAGA CCTGAAATGT TACTTCCCAT GGGACTGCCA 
    GAGGGTGTTA ATGTTATTGC ATGGGGTCTT TCACTAGAAA GGCCAACAAT 
    GATTCTTTAC GGCATCGACA ACATTCGAGA CCTCTTTGGA CCAAAGGTTG 
    ATTTCAACCT CATCAAGAGC AACCCTCTCT GCCGCTTGGG ACTGCAGTAA 
    AACCTTGCAA AAGTTGGTTG GAAGTGATTA AGTAACAAGA TTTGTTTAGT 
    TGATCAGTGG TTGAACGTGA AGAGATCATT TCTGGCTTAC CTTGAAACAC 
    CAATACATGT GCATTTAGCA GAGGTTTTTG TATTACAGTT TTGAGTGATA 
    TGAGACTACC AGCCAATTTT TGTGTGTGTC CATATTCGAA TACTTTGATA 
    CATTTTAATT GAGCACATCC AATGTATGAA GTGGTCATCT GCCGCTGCGG 
    TTGCTTGAAT CAAAATATGG ACCATTGTTT TCTTTTCTTT GACAAACTTG 
    GCGCTCCAAA AACTGTTGTT GAGAAGTGTC ATCAAACAGG ATGTAATAGT 
    TATGATACTG ATCTAAGATT AATAATATCT GCTGAAGCTG ATGCCTTTCA 
    CACCTC

    Gene models with high sequence identity

    1. AT4G39280.1 [+] show detail - phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
      E-value: 0; Score: 662.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily SSF55681 7e-71
    HMMPanther PTHR11538:SF15 0
    HMMPanther Phenylalanyl-tRNA synthetase alpha chain 0
    Gene3D G3DSA:3.30.930.10 2.70001369379065e-101
    HMMTigr Phenylalanyl-tRNA synthetase, class IIc, alpha subunit 4.40002866058555e-109
    ProfileScan Aminoacyl-tRNA synthetase, class II, conserved domain 0
    HMMPfam Phenylalanyl-tRNA synthetase alpha chain 4.59999999999996e-88

    See the detailed result >

    AT4G39280.1

    Model type
    Protein coding
    Short Description
    phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative
    Computational Description
    phenylalanyl-tRNA synthetase, putative / phenylalanine--tRNA ligase, putative; FUNCTIONS IN: phenylalanine-tRNA ligase activity, tRNA binding, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: phenylalanyl-tRNA aminoacylation, tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit (InterPro:IPR004529), Phenylalanyl-tRNA synthetase alpha chain (InterPro:IPR002319), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: phenylalanyl-tRNA synthetase class IIc family protein (TAIR:AT3G58140.1); Has 10138 Blast hits to 10129 proteins in 3092 species: Archae - 343; Bacteria - 6159; Metazoa - 288; Fungi - 276; Plants - 100; Viruses - 0; Other Eukaryotes - 2972 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR