K39216

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39216

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39216

Determination of introduced cDNA(s)

  • J013166L11 - Rice Full-length cDNAs - Original: J013166L11

    full reading [+] show sequence

    Nucleotide sequence: J013166L11 - full reading
    GACAAAACCC CACTCTCCTT GCTCCGCCCC CGCCGCGTCG CCGTCGCTAT 
    TGCGCCGCCG CCGCCGCCGC CGCCGACGCC GTGCGTCGCG AAGTGCTACC
    AGGAATGCTG GGATGAATTC ATATTGTGAT AAGAAAGAGG TTACTGTAGC
    TTTTAGCAAA ACTAAAAGGC AAGAGGAGGA TGAAGTGATT TGGAGAATGG
    TAGAACAAGG CGCTACAGAT GATGAAGAGT GTGGTGGTAC CAACTGTTCG
    GCTGGCGAAA ATAGGGATCC TGGTTGGCCT GGAACGAGTG TCTTCAGGAT
    GCTGATTCCT GCAACTAAAG TTGGCGCAGT AATTGGTCAC AGTGGAGAAA
    GGCTTAGAAG ACTGTGTGAG GAAACAAAAG CCTGCGTCCG AGTAATAGGT
    GGCCACTTTG CTGCTGCAGA GCGAGCTGTA ATCATTTTTG CAAAGGAACA
    ACCTGATGAG CCAAAACCTC CAGCTATTGA TGCACTACTA AGAGTATATG
    AGTGTATAAT CAATGATGAT GGTTTAGATG TGAGATATAA CAATATAGTT
    GTGGCACGGA TTCTTACACC AAGTGAACAG GCAGCAAGCC TTATTGGCGA
    TCAGGGTTCA GTGATTAATT ATATCAAGAA AGCTTCTAAA ACCAACATCC
    ATGTTATTGA CGGTGACTTG CCACCTGTTG CACTTGAAGA TGATATGATT
    ATTGAAATTT GGGGACTGCC TGCAAGAGTG CATCAAGCAT TGGAACTTGT
    TGCTTGTCAT TTGAGAAAGT ACCTGGTTCA TCGAAGTGTC ATCCCACTGT
    TTGACCCCCA TGTGTCTATT CCAATCTCAC CTGTGGATAT GCCCCCATTC
    CACTACAGTG ACCATCATGA GGGCCTTCTG CACGAAGCTA GTCCAGGCTA
    TTACTCCCTA TATGCTGAAG CTTTTCAACT TGAACACCCA TGGACTGATA
    CTAGTTATTC AAGGTATCCA ATGGAAAACT TTACACATGC TGACATATTT
    GAATACAGAC AAGAAGCACC AGTATTTTTT GGGAGATATC GGTCAGTCAC
    ACCTCCACAT TATGGGCATG AAGCAGAAGC ATATTTATCA TCTCCAATGG
    AATTATGTTT GCATAACAAC CTGAATACAT ATGGATGGCA AGCAACTCCA
    CCAATTGGTC GATCAGATAC TGTTGAAAGA ATACGCTCCC TTATATCTGT
    GTATGGAAAA CAGGCACATC CACATCGGCT GAGGCAGACA TATCAATCAA
    CTAAAATGGA AAAACATCCA CACTCGGGGA TATCTTTGTA CAGAAGGGAT
    GATCATCCAA CAAGGGTATC TCCATCACCT GCTACTGAAC TACCCCCATC
    TCCTGCTGTT TCTGCATATA AATGGCAAGT ATCTCCATCC TTAAAGATGT
    ATCCTTCAAC TAATGTCGAA AACCTTCAAC ACTGCCGTGT TTCTGCATGC
    GCTCCAGAAG AACTGCCAAA TGTGGTTGTG CCTTCGTTAA CTAGTCAATC
    TCCTGCAGTC ACTTCTCAGG TTATAATGAA GATGCAAGTT CCAATTTTCT
    ATGCTGAAGC GGTAATTGGC CCAACTGGTG CACGAATTGA TTACATTCGC
    CAAGCCAGCG GATCAAGCGT CGTGATAAAG GATCTTGATG ACAGTGCAAT
    GTCTATTGAG ATCACTGGAA GTGCTGCAAC AGATGTTCAA ATTGCAGAGC
    AGTTGATAAA GAACTTCATG GCTGAAGCTG CTGCCGCTTC CCCTGATCAC
    AGTTATGACT TCATTCCATC ACATTTGCCA GCACCGAGAT CTCCAGAGCC
    AGATATTCCA ACTACTTCAC TCACTCGCAG AGCAAGCTGT TTTACAGAAC
    CTCGCCTGCA AGCGACCTAC TGAGTTCCCA AGAGTTCTCT TTCTGCACAT
    AGTCCCTACA CCGGCAATAC AGGAAATCCG CGAGAGTACA TTCCCAGAAA
    GTTTTGATAT CCATCCTCAG ATGATTAATA TGCGCCCCCT TTTTGAACCC
    CCAAGACTTG TATCTAATAT TTTCTTTTTC TTTGGCTTTT AGCCATAGAC
    TTTGATCCAT GAGTTAGAAA TTGACTCTGA TCCATGAGTT AGAAATAGAC
    CTTGATCCAT GGGTTAGAAG TCTGAGATTA TGGTATAGGA CAACAATTTT
    TTGGTGGATT CAGGGTAAGT GATGTACAAG ATATGTGCCC TCAGATGTTT
    GAGAGACAGT TTGTATTACA TG

    Gene models with high sequence identity

    1. AT3G04610.1 [+] show detail - RNA-binding KH domain-containing protein
      E-value: 2e-47; Score: 187.00

     

    InterPro Scan Digest

    Program Description E-value
    ProfileScan K Homology, type 1 10.211
    ProfileScan K Homology, type 1 11.699
    ProfileScan K Homology, type 1 12.978
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.000000000013
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.000000000036
    superfamily Eukaryotic type KH-domain (KH-domain type I) 0.0000000059
    HMMSmart K Homology 0.000014
    HMMSmart K Homology 0.00000042
    HMMSmart K Homology 0.0000032
    HMMPfam K Homology, type 1, subgroup 0.00000022
    HMMPfam K Homology, type 1, subgroup 0.0000000039
    HMMPfam K Homology, type 1, subgroup 0.00000044
    Gene3D no description 0.0000038
    Gene3D no description 0.0000073
    HMMPanther RNA-BINDING PROTEIN-RELATED 8e-63
    HMMPanther RNA-BINDING PROTEIN RELATED 8e-63

    See the detailed result >

    AT3G04610.1

    Model type
    Protein coding
    Short Description
    RNA-binding KH domain-containing protein
    Computational Description
    flowering locus KH domain (FLK); FUNCTIONS IN: RNA binding, nucleic acid binding; INVOLVED IN: positive regulation of flower development; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), K Homology (InterPro:IPR004087), K Homology, type 1 (InterPro:IPR004088); BEST Arabidopsis thaliana protein match is: RNA-binding KH domain-containing protein (TAIR:AT4G26000.1); Has 8156 Blast hits to 5360 proteins in 381 species: Archae - 0; Bacteria - 269; Metazoa - 3587; Fungi - 776; Plants - 1209; Viruses - 216; Other Eukaryotes - 2099 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR