K39237

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39237

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39237

Determination of introduced cDNA(s)

  • J013094H15 - Rice Full-length cDNAs - Original: J013094H15

    full reading [+] show sequence

    Nucleotide sequence: J013094H15 - full reading 
    GCCTTCCATC TGCAGCAGCA ACCGCCGCAG CCGCCGCCGA TGGCGATGGC 
    GAGCACCTAC CAGTACCAGC AGTACCAGCA GCTGCAGCAG GCGCAGCAGC 
    TCTTCCAACG CGACGCGCAG ACCATCACCC CCGAGGCGCT CGAGAGCGTC 
    AAGGCCGCCC TCGCCACCAG CGACGTCCTC GACCCCGCCA ATGCCAGAGC 
    CACCGCAACC TCCTCCTCCG ACCCTGCCGC CAAGAAGAAA GCCATCCCCC 
    GCCGCGCCGC CGGCCAATCC TGGGAGGATC CCACCCTCAC CGACTGGCCC 
    GACAATGACT ATCGCTTATT TTGTGGAGAT CTGGGCAATG AAGTCAATGA 
    CGACGTCCTC TCAAAAGCTT TTTCACGGTT CCCCTCCTTC AACATGGCAA 
    GGGTTGTTCG AGATAAGAGA ACTGGCAAAA CAAAAGGATA TGGATTTGTG 
    AGCTTTTCAA ACCCTACTGA CCTTGCTGGA GCAATTAAAG AAATGAATGG 
    GAAGTATGTT GGGAACCGCC CTATTAAATT GCGTAAAAGC AATTGGAAAG 
    AGAGGACCGA TGTTGATGCT CTAGAAAGAC AGAAAAATCA CATCCAGAAG 
    AAACCTAAAA TGCCCAAGAA AAGTATCCTT CACAAGTAAA GCTATATTAG 
    CCCTACTAAG CGCCATCCAT GTAAACATAC TTTGTTGGGT GATGGGGCTC 
    AAGAAAACTA CTCTTACTGC AAAGGTTGTG GACCAGGGAG GGTGTACATT 
    TGACTGCAGC TGTCTGTTAG CAGAGTGGTG CGTCGCTTCT AAGCAATTTT 
    TCTTCTTACG ACAAGCTGAT GTTTACATCT GCAGGAAGTT TGTTAAAGCT 
    GAAGCTAGTT TTGCTGATGT TTACTGAGAA TGACTCCCTA GAATGGATGG 
    TTTGCTTAAG GTGGTAATGA TGTGTATTTA GATATGGCAT TTGCATTTAA 
    GGATGGCATT GCAATGTAAT AAAGATGTTG TTGGTATTGT AGTTTATCTT 
    ATAAAGTGGC ATCGCAGT

    Gene models with high sequence identity

    1. AT3G04500.1 [+] show detail - RNA-binding (RRM/RBD/RNP motifs) family protein
      E-value: 3e-67; Score: 252.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam RNA recognition motif, RNP-1 4.7e-18
    Gene3D Nucleotide-binding, alpha-beta plait 2e-20
    HMMSmart RNA recognition motif, RNP-1 1.5e-19
    HMMPanther RNA recognition motif-related 2.5e-48
    HMMPanther RNA-BINDING PROTEIN 2.5e-48
    superfamily RNA-binding domain, RBD 1.5e-21
    ProfileScan RNA recognition motif, RNP-1 16.142

    See the detailed result >

    AT3G04500.1

    Model type
    Protein coding
    Short Description
    RNA-binding (RRM/RBD/RNP motifs) family protein
    Computational Description
    RNA-binding (RRM/RBD/RNP motifs) family protein; FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA recognition motif-related (InterPro:IPR015464); BEST Arabidopsis thaliana protein match is: oligouridylate binding protein 1B (TAIR:AT1G17370.1); Has 13292 Blast hits to 10995 proteins in 692 species: Archae - 0; Bacteria - 989; Metazoa - 6848; Fungi - 1697; Plants - 2705; Viruses - 0; Other Eukaryotes - 1053 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR