K39242

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39242

Phenotypes

Morphological phenotypes

Specific phenotypess were NOT observed.

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39242

Determination of introduced cDNA(s)

  • J033071E12 - Rice Full-length cDNAs - Original: J033071E12

    full reading [+] show sequence

    Nucleotide sequence: J033071E12 - full reading 
    GAGGTTTTGC CGCTGTCCGC CTGCCTGCCT ACTTTCTCCA CTTTTTTCTC 
    CTCCTCCTCC TCTTCTTCTT CCTTCGTTTC GCCTCCTCTA CTCTTCTAAG 
    TTCCAACTTC CAACTAGCTC GACTCAAGTG AAGAGTCCGC CGCCTTTCCC 
    TCCTCGCCGC CGCTCGGATG GGGATGGCCC CCGCCGGTCG CCTCCTCCTC 
    ATCTCCTGCC TCCTCTGTGT GCCCAATTCA TTTGGATTTG CATTTGCTGT 
    GGAGGAGGAG GAGGACGGCA GCGGGCTGAT GCCACAGCTC TCACCCACCG 
    GCTCTCCCAA CCCCTTGGTT CCCTTCCTCG CGCCCGCCCC TCTCGCGCCA 
    TTCTTCAACA CCACCCCTCC TAACTTGTCA GGCAAGTGCT CATTGAATTT 
    TACTGCTGTC GGTGACCTCA TCACCACCAC TGCTGTCGAC TGCTTTGCGT 
    CCTTCGCCCC GTTCCTCGCC AATGTCATCT GCTGCCCCCA GCTCCAGGCC 
    ATGCTCACCA TCCTCATTGG GCAGTCCAGC AAGCAGACTG GCTCCCTTGC 
    TTTGGATCCC ACCGTCGCTA CCTACTGCCT CTCCGATGTT CAGCAGCTAT 
    TGTTGAGCCA GGGCGCTAGT GATGAGCTCC ACAACATTTG CTCCCTTCAC 
    CTCTCCAATG TCACCGAGGG ATCATGCCCC GTTAGCACCG TCGATGCCTT 
    TGAAGCTGTC ATCGACTCCT CAAAGCTCCT CGAGGCCTGT CACAAGATTG 
    ATCCTGTCAA CGAGTGCTGC AGCCGCACCT GCCAGAATGC TATCAACGAT 
    GCCTCCCAGA AGATCTCTTT CAAAGACGGC GGTTTGACAA GCTACGCTGG 
    TAGCCCCAAA GTTGATAGCT GCAGGAATGT CGTGCTCAGA TGGCTATCCA 
    GTAGGCTTGG CCCATCATCT GCAAAGCAAA TGCTCAGGCA GATATCTAAC 
    TGCAATGTCA ATGGAGTTTG TCCACTAAGC TTTCCAGACA CGAGTAAAGT 
    GGCAAAAGAG TGCAGTGGAA CTGTCAAGAA TGGTACTTCA TGTTGCAAGG 
    CTATGGACAG TTATGTATCT CACTTGCAAA AGCAAAGCTT CATAACAAAT 
    TTGCAAGCTT TAGATTGTGC CCAATTCCTT GGTGACAAGT TGCAAAAGAT 
    GAATGTCAGT ATGAATGTTT ATAGCTCATG TCAGATAACT CTCAAGGACT 
    TTTCTCTTCA AGTTGGATCT CAAGAATCTG GATGCCTTCT TCCAAGTATG 
    CCCTCGGATG CATCTTTTGA CCCAGCTACT GGGATTAGTT TCACATGCGA 
    TCTGAATGAT AATATTGCTG CCCCATGGCC ATCTTCTATG CAAGCATCGT 
    CTTCTTCATG CAATAAATCT GTTAATATTC CAGAGAGACC TGCTGCGACA 
    TCGGCACAAA ATGGTGTCAA CCAGAACAGA CTGGAGCTTA GCCTACTTAT 
    TTATCTGGGC ACCCTTGTTG TTGCTATTTG GCTACAAGTC TAGTCCAGTT 
    AGCGAATTAT TAATTTCAGA TTCAGGAGAG CTGATTGGAA TTGTCAACTG 
    CGGAGTTTTT GTGCTTGATG ATCACATCAA AGTGTTGTAG GTTACATGTG 
    CTTTTTAGTT CCTGATAGCT GTTAGTGTAA TTTCTTGTAA GCCATATAAT 
    AGTAGTAATA ATTTATTATG CCTTTGTATA GAGAGAAAGA AGGGAAAAAA 
    ATTAAAGGGT GTGAAATGCG CAGGACAATT TAGCAAGACC ACTGTTGTCT 
    GATGGGAGTA CATCATATTG GGATGGACTA CACTCCATTA TTGTTTAGAA 
    TTTATATTAT TCAATTGTTC ATTTTCTGAT GTATGAATTA ATCATGACAG 
    AGAATCATAT AATCTCATCC G

    Gene models with high sequence identity

    1. AT1G61900.1 [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...
      E-value: 5e-116; Score: 415.00

     

    InterPro Scan Digest

    See the detailed result >

    AT1G61900.1

    Model type
    Protein coding
    Computational Description
    unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to plasma membrane, plasma membrane, anchored to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G30700.1); Has 65 Blast hits to 65 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 65; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR