K39545

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K39545

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • increased size (PATO:0000586)
    (Rosette leaf::Shape::large)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K39545

Determination of introduced cDNA(s)

  • J013036F22 - Rice Full-length cDNAs - Original: J013036F22

    full reading [+] show sequence

    Nucleotide sequence: J013036F22 - full reading
    GTGCCATGGT GCCATGGCCG GCGACGAGGT GGATGCGCCG AAGGCTCTCC 
    TCCCACCCAG ACCGGCCATC CTCGTGGCGA GCGCCGGTCA GCATCTACCA
    AGGTCCAAGG GCAAATGGTA CGCGCCGCCA TCGTACGGTC GATCTCGTCG
    TGCGCGTCCT GTTCGATGCC CCGACGCCGC TCGCCGCCCG TCCTCGCGGA
    CGCCGCCGGA GCCGGAGCCA CCGGTTGGTT TGGTAGACTT GTCCCCCTTC
    GCCTGCCTCC GCTTCACCTC GTCGACGCCT CACCCCACTT CGATTCCCAC
    CACCACTCCA CCAGCCGTCC ATACACCCCG ATCCCCAATC CCCAGTTCCA
    GTGAGGTCCA CTGCCACTTG CAGCTCGCCG GAGAGAAAAC GCGACAGGTT
    GGAACTGCAA GGTGGCGACC TGGAGGTCAG GGCAAGTCTC AGTGATCATC
    CGGTCATCGT GGATGCGTTG CAGGAGCGAG TTAATCCTGC TGCTCCGCTG
    CTCGCCAGTG CGGCGCTGCT TCTGCCTGGT GATCTCATCT AGCTTTGCAA
    ATCAAGCATG TGTTCCTGCA CCGATAAATC ATTGGTCTTG AAGCTGGAGC
    GATGGGGATG GAACCATCAA GGTTTTCCTT CCACGTGACC AGCATCGTCT
    TGGTAGACTC ATCAGGATGG CACCATACCA CTGAAGTTGT TGTGTGATAA
    GTCAAGGACC TCAAGATAAC ATTGGGTACA TATAGAACTT GGTATATGAC
    CACTTATTTT ATTCCTGGAA AAGCTAAGAT AGTAGACGTT TCGAAGATAC
    CTGCCGAAGT CACGAGTAAT TGAAGAGAAG CTGTTGCTAG AGTAATCCAA
    GAGAACACCA CCATCTCTAG TAGTTGTCAG TGGTATAGGT ACGTTACCAT
    GCAGTCTGTT GGAACTAAGA TTGAGTCTAT CTAAAGTGTG CAAGGGAAGA
    ACAGATGGAT TATTTTCCAA GCTAGTGAAC ATGTTGTTAG AGAGTACTAA
    CACGGACAAG CTATTCTTCC AGTTATCCCA TATCCAGCTT GGTATTACTC
    CATTTATTCT GTTGTTTGAA AGGTCCAAGT AAGACATACC TTTTATATCT
    CTCAATGCGC CTGGAATTTT TGTAAGGTTG CAAGATGCTA GTCCCAGGTA
    TTTGATTGTA GGGAAGTAAT GAAATGGATA GCCATCTTCT CGATCTATCA
    CCGACAACAT ATTGTTAGAG ATAATTAATG ATTCTAGTTT CTCCATCTTC
    CAAAGAAGGT TAATTTCCAG TGTACCATTC AATTGATTTG ATTGAAGCAC
    GAGATTTGTT AGTCTTCTAA GATCAAAGAA CGATTTGGGT ATGTAGCCTG
    TAAGGTGGTT ATAGCTTAAG TCGATGAATT CTAACAACGA GGAAAACGGG
    TCTGAAATGT CTTCTAGATG TCCAGAAAGT TGGTTTGATC GCAGATCTAG
    CATTTCCAAC GATTGATGAG CGAAAAGAAG CTTCGGGATT CTACCTGTGT
    GGATGAGGGA CAGAGAGAGA ACAACAGTCA AAGTTTGTTC AAAAAAGAAA
    AGCACAGAAT GTCAGAAGTC CTGATATATG TACTCAAATG TGTGTTCTTA
    CCGCTGAGGC TGTTAAGTGA AAGTTCCAAA TAGATAAGCT TAGTCAAGTT
    CCCAATCCAT GATGGTATTG GCCCATAGAA GCTGCAATTA AAGAGCACTA
    AAGATTCCAA ACTTGTACAG TTTCTGATCC AAGGGGGTAT TGGACTGGAG
    AAATTATAGC CTTCGAGCAT CAAGTCTCTC AGTTTAATTG TTCCAATCCA
    AGATAACAGT GGCTTCTCTA TGCCTGATCC AGAGAGCCAT AATGTATCTA
    GAGATGGAAG GCTAGGTATG AAAGTAGCAA CCTGCTTGGG AGATCCTACG
    TTGCTAAGGC CCAAAAATTT CAATGATTTG AGGTGGATAA ACGAGGCTGG
    CATGTTACCA GAAAAGTTTG TCCTCTGAAG ATTTAGTGAT TCCAAATATT
    TTCCAGGTGG GAAATCCGGA AGTTGGACAA AAAGAGTAGG ATTGAAAGAT
    ACATCAAGAG ACCTCAAATT TTCTACCTGG AATATCTTTG TGGGAAATTG
    CCCTTCAAAA TTATTGTTCG AGAGAGCAAG GTCACTCAAG AAAAAGAAGT
    CTGCAAAGAA CTCAGGAACC CTTCCAGAAA TTCCATTGTA GTTGAGGTTG
    ATCACCACTA GAGAGCGGAG TTGGGAAAAT GAACGATGAA TAGTTCCACC
    TAGGTCACAT TGGGACAAAC TAAGATTCTG CAGCAGAGGG AGAGAGTGTG
    CTAAAGCAAC GGACCAGGTT GGTTCACTAG TAATGCGCAC TTGATCAAGA
    TAGAGCTCTC TCAAATTGCT CAGGTTTGCT ACAATGGTTT GAAAACTCGG
    TTCTTGAAAA AACAGATAAT TGAAGGAAAG ATCAAGAGCA CGCAAATTCT
    TGAGATGTGC AATTCCAATG GGTATCTGAC CAAAGAAGCC TGCTTCTGAC
    AAATCGAGCC TGAGGAGTTT GGTGAGCCGC TGAAACCCGA AACTAGGAAG
    AACGGTCCGG TTGAAATCGT TACCAGCAAG GCTGAGGTTT CTCAGAGTGG
    TGAGGTTGAA GACCGCTGGG TCTAGGCCAC CGGGGCTCTG GAGATTATAG
    TAACTGAGGT CCAACGCTGT TACCTGCCCA GAGGATGTGT CGCAGGTGAC
    ACCCTCCCAG TGGCAACAGT CGGTGTTCAG TTTCCATGAC GAGAGGTTTG
    GATTAATGAA GGAGCTCTTC AGCTGGAGAA GCGCTTCAGC TTGGTGAGGA
    TGGCAATGAA CTGGGATGGT GGTGTTGGCA ACAGTTTGGA TGGAGCAGTA
    CAATGTGAGT AGCAGCAGTA TGAGGAGAAG CTGTGGTAGT GTGGATGCCA
    TCTCTGTATT GGTTTGCCAC TACACATAAC CACTTGGGTG GGTGGTTCTC
    AAGGTAATAT ATGTAGGTTA ATTACATAGG AAAAACAGTA GGTTTTAATT
    AAAAAGAAAA GGGAAAAGGC TGGCCTGTAC ATCATTAAAT TTTTATATTT
    GTTAGTATTT CCTCAATATG TTGCGTTCAA TCATCAATAT AACCTTTACC
    TGTT

    Gene models with high sequence identity

    1. AT3G05650.1 [+] show detail - receptor like protein 32
      E-value: 5e-54; Score: 102.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPanther LEUCINE-RICH REPEAT TRANSMEMBRANE PROTEIN KIN 3.7e-34
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.7e-34
    HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 3.4e-33
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2.5e-05
    FPrintScan Toll-like receptor, leucine rich repeat-containing 2.5e-05
    HMMPfam Leucine-rich repeat-containing N-terminal domain, type 2 1.6e-14
    HMMPfam Leucine-rich repeat 0.59
    HMMPfam Leucine-rich repeat 0.017
    HMMPfam Leucine-rich repeat 0.15
    HMMPfam Leucine-rich repeat 1.1
    HMMPfam Leucine-rich repeat 0.17
    superfamily L domain-like 1.5e-57
    superfamily L domain-like 7.7e-38
    Gene3D no description 6.4e-47
    Gene3D no description 9.6e-21
    Gene3D no description 2.4e-27
    Gene3D no description 2.4e-06

    See the detailed result >

    AT3G05650.1

    Model type
    Protein coding
    Short Description
    receptor like protein 32
    Computational Description
    receptor like protein 32 (RLP32); FUNCTIONS IN: kinase activity; INVOLVED IN: signal transduction, defense response; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat-containing N-terminal domain, type 2 (InterPro:IPR013210), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: receptor like protein 35 (TAIR:AT3G11080.1); Has 113074 Blast hits to 30005 proteins in 1111 species: Archae - 53; Bacteria - 9058; Metazoa - 26342; Fungi - 1162; Plants - 67072; Viruses - 12; Other Eukaryotes - 9375 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR