K40309

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40309

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • abnormal (PATO:0000460)
    (Cauline leaf::Others)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • decreased thickness (PATO:0000592)
    (Stem::Shape::thin)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2 seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Original: K40309

Determination of introduced cDNA(s)

  • J023002G03 - Rice Full-length cDNAs - Original: J023002G03

    full reading [+] show sequence

    Nucleotide sequence: J023002G03 - full reading
    GGTGTTACGG GAGCATGGAG CTCACTGAGA GTAAGTGCGA TGGCGGGCAA 
    GAAGTTAGCT TGCTGGACGC TCAGCTCGAG CTCTACTGGA ACACCTTCGC
    CGTCATCAAG TCCATGGCTC TCAAGTCGGC GCTAGACCTC CGCATCGCCG
    ACGCAGTCCA CCTCCACGGC GGCGCCGCCA CCTTGGCCGA GATAGCCAGC
    GAGGTGGCCC TCCACCCGTC CAAGATCCCC TGCCTCCGCC GCCTCATGCG
    CGCGCTCACC GTCTCCGGCG TCTTCGCCGC CGCCGTCAAG CCCGGAGACG
    GTGGTGGTGG TGAGCCCGTG TACGAGCTCA CGCCGTCGTC GCGGCTCCTC
    GTCGGCTCCT CGAACCTGTC CGGCATCATG TCCATGATCC TCCACCCGAC
    GCTCGTCGTC CCCTTCCTCG GCGTCGGCGA GTGGCTCCGC CGCGACCGCG
    AGCCGCCGGA GGAGGACCCG TACTGCATCT TCAAGCAGGC GCACGGCCGG
    AGCCTGTGGG AGCTGGCCGG CCGCGACGCG GCGTTCGACG CGCTCATCAA
    CGACGGGATG GTCTCGGACA GCCGCGTCAT CATGGACTAC GTCGTGAGGG
    AGCACGGCGA GGTGTTCCGG GGGATCGCCT CCCTGGTCGA CCTCGCCGGC
    GGGCTCGGCG CGGCGGCGCA GGTCATCTCG AAGGCGTTCC CGGAGGTGAG
    GTGCAGCGTG ATGGACCTCG GGCACGTCGT CGCCAAGGCT CCCGCCGGCA
    CCGACGTCGA GTACATCGCC GGCGACATGT TTGAGAGTGT GCCACCGGCA
    GACGCTGTCT TCCTCAAGTG GGTTCTACAT GACTGGGGCG ATGACGATTG
    CATCAAGATA TTAAAGAACT GCAAGAAAGC TATCCCTCCT AGAGACAAAG
    GAGGAAAGGT GATAATCATG GATATAGTGG TCGGAGCAGG ACCGTCTGAC
    CAGAAGCACA GGGAGGTACA AGCGTTGTTC GATATGTACA TCATGTTCGT
    CAATGGCATT GAAAGAGATG AGCAAGAGTG GAAGAAGGTT TTTATGGGGG
    CTGGATTTAG TGGGTACAAG ATTATGCCAG TCCTGGGTTT TAGGTCAATG
    ATCGAGGTGT ACCCTTGAAG GTGACACCGG TGATTGTGAT TGTGAAATCA
    ATGATTGGTG ATTAGTTGCT CGGTGGAGAT GTGGAGTGTA GCATGTTTGT
    TTGTTGTTGT GAGATTCACA ATAGTGATGA TTGTGTGGGT GTGTTTTCTT
    GGTTGTATGT GAAATTGTGA TTAGAATTCA GACCAATAAT AAATTGTGAT
    ACTATGTTGT ATCGATGTAA ACTATAGGAA AACGACACGG GTGGACTATA
    TTTATCC

    Gene models with high sequence identity

    1. AT4G35160.1 [+] show detail - O-methyltransferase family protein
      E-value: 1e-45; Score: 181.00

     

    InterPro Scan Digest

    Program Description E-value
    superfamily S-adenosyl-L-methionine-dependent methyltrans 1.1e-75
    superfamily "Winged helix" DNA-binding domain 5.4e-27
    HMMPIR O-methyltransferase, COMT, eukaryota 3.3e-163
    Gene3D Winged helix-turn-helix transcription repressor DNA-binding 4.8e-27
    Gene3D no description 6.6e-69
    HMMPanther O-METHYLTRANSFERASE 4e-50
    HMMPfam O-methyltransferase, family 2 2.8e-71
    HMMPfam Plant methyltransferase dimerisation 8.6e-13

    See the detailed result >

    AT4G35160.1

    Model type
    Protein coding
    Short Description
    O-methyltransferase family protein
    Computational Description
    O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR