K40309

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Phenotypes

Morphological phenotypes

Generation	Anatomical entity /structure development stage	Phenotypes
T1
	cauline leaf (PO:0000013)	decreased size (PATO:0000587) (Cauline leaf::Shape::small) abnormal (PATO:0000460) (Cauline leaf::Others)
	rosette leaf (PO:0000014)	decreased size (PATO:0000587) (Rosette leaf::Shape::small) epinastic (PATO:0000945) (Rosette leaf::Shape::epinastic) abnormal (PATO:0000460) (Rosette leaf::Others)
	stem (PO:0009047)	decreased thickness (PATO:0000592) (Stem::Shape::thin) abnormal (PATO:0000460) (Stem::Others)
T2	seed (PO:0009010)	increased size (PATO:0000586) (Seed::Shape::large) increased length (PATO:0000573) (Seed::Shape::long)

Invisible phenotypes

Photosynthesis::Others::high light stress

Original: K40309

Determination of introduced cDNA(s)

J023002G03 - Rice Full-length cDNAs - Original: J023002G03

full reading [+] show sequence

GGTGTTACGG GAGCATGGAG CTCACTGAGA GTAAGTGCGA TGGCGGGCAA 
GAAGTTAGCT TGCTGGACGC TCAGCTCGAG CTCTACTGGA ACACCTTCGC 
CGTCATCAAG TCCATGGCTC TCAAGTCGGC GCTAGACCTC CGCATCGCCG 
ACGCAGTCCA CCTCCACGGC GGCGCCGCCA CCTTGGCCGA GATAGCCAGC 
GAGGTGGCCC TCCACCCGTC CAAGATCCCC TGCCTCCGCC GCCTCATGCG 
CGCGCTCACC GTCTCCGGCG TCTTCGCCGC CGCCGTCAAG CCCGGAGACG 
GTGGTGGTGG TGAGCCCGTG TACGAGCTCA CGCCGTCGTC GCGGCTCCTC 
GTCGGCTCCT CGAACCTGTC CGGCATCATG TCCATGATCC TCCACCCGAC 
GCTCGTCGTC CCCTTCCTCG GCGTCGGCGA GTGGCTCCGC CGCGACCGCG 
AGCCGCCGGA GGAGGACCCG TACTGCATCT TCAAGCAGGC GCACGGCCGG 
AGCCTGTGGG AGCTGGCCGG CCGCGACGCG GCGTTCGACG CGCTCATCAA 
CGACGGGATG GTCTCGGACA GCCGCGTCAT CATGGACTAC GTCGTGAGGG 
AGCACGGCGA GGTGTTCCGG GGGATCGCCT CCCTGGTCGA CCTCGCCGGC 
GGGCTCGGCG CGGCGGCGCA GGTCATCTCG AAGGCGTTCC CGGAGGTGAG 
GTGCAGCGTG ATGGACCTCG GGCACGTCGT CGCCAAGGCT CCCGCCGGCA 
CCGACGTCGA GTACATCGCC GGCGACATGT TTGAGAGTGT GCCACCGGCA 
GACGCTGTCT TCCTCAAGTG GGTTCTACAT GACTGGGGCG ATGACGATTG 
CATCAAGATA TTAAAGAACT GCAAGAAAGC TATCCCTCCT AGAGACAAAG 
GAGGAAAGGT GATAATCATG GATATAGTGG TCGGAGCAGG ACCGTCTGAC 
CAGAAGCACA GGGAGGTACA AGCGTTGTTC GATATGTACA TCATGTTCGT 
CAATGGCATT GAAAGAGATG AGCAAGAGTG GAAGAAGGTT TTTATGGGGG 
CTGGATTTAG TGGGTACAAG ATTATGCCAG TCCTGGGTTT TAGGTCAATG 
ATCGAGGTGT ACCCTTGAAG GTGACACCGG TGATTGTGAT TGTGAAATCA 
ATGATTGGTG ATTAGTTGCT CGGTGGAGAT GTGGAGTGTA GCATGTTTGT 
TTGTTGTTGT GAGATTCACA ATAGTGATGA TTGTGTGGGT GTGTTTTCTT 
GGTTGTATGT GAAATTGTGA TTAGAATTCA GACCAATAAT AAATTGTGAT 
ACTATGTTGT ATCGATGTAA ACTATAGGAA AACGACACGG GTGGACTATA 
TTTATCC

Gene models with high sequence identity

AT4G35160.1 [+] show detail - O-methyltransferase family protein
E-value: 1e-45; Score: 181.00

InterPro Scan Digest

Program	Description	E-value
superfamily	S-adenosyl-L-methionine-dependent methyltrans	1.1e-75
superfamily	"Winged helix" DNA-binding domain	5.4e-27
HMMPIR	O-methyltransferase, COMT, eukaryota	3.3e-163
Gene3D	Winged helix-turn-helix transcription repressor DNA-binding	4.8e-27
Gene3D	no description	6.6e-69
HMMPanther	O-METHYLTRANSFERASE	4e-50
HMMPfam	O-methyltransferase, family 2	2.8e-71
HMMPfam	Plant methyltransferase dimerisation	8.6e-13

See the detailed result >

AT4G35160.1

Model type: Protein coding
Short Description: O-methyltransferase family protein
Computational Description: O-methyltransferase family protein; FUNCTIONS IN: methyltransferase activity, O-methyltransferase activity, protein dimerization activity; LOCATED IN: cytosol; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), Plant methyltransferase dimerisation (InterPro:IPR012967), O-methyltransferase, family 2 (InterPro:IPR001077), O-methyltransferase, COMT, eukaryota (InterPro:IPR016461); BEST Arabidopsis thaliana protein match is: O-methyltransferase family protein (TAIR:AT4G35150.1); Has 3345 Blast hits to 3334 proteins in 568 species: Archae - 3; Bacteria - 935; Metazoa - 112; Fungi - 688; Plants - 1514; Viruses - 0; Other Eukaryotes - 93 (source: NCBI BLink).
Link: InterPro Scan - TAIR