K40402

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40402

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
root (PO:0009005)
  • present in greater numbers in organism (PATO:0000470)
    (Root::Number::many)
T2  
rosette leaf (PO:0000014)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K40402

Determination of introduced cDNA(s)

  • J023140I22 - Rice Full-length cDNAs - Original: J023140I22

    full reading [+] show sequence

    Nucleotide sequence: J023140I22 - full reading
    GTCCTGCGCC TCACCTTGTC TAGTTAGCAA TGGCGGCTGA TCACCTTGTC 
    GTGGCCATGC TTCTCCTGCT GGCTTTGTCG CCGCCGGCCG TTGCTGACGA
    CACGGCGGTG CTCGGCCGGA AAGGCGGCGT CGTGGAAGGG CAGGCGGCGG
    GGCCGGGGAG GTACGCCGTG ATATTGGACG CCGGCAGCAC CGGCACACGG
    GTGCACGTCT TCAGGTTCGA CAACAAGCTG GACCTCCTCA AGGTCGGCGA
    CAACATCGAG CTCTTCGCTA AGGTGGATCC TGGGCTGAGC TCCTACGCTG
    GACGTCCTCA GGATGCCGCA AACTCCATAT TGCCTCTGCT TGACAAGGCC
    AACACCGTTG TTCCTGCCAG ACTTATGAAC AAAACTCCCC TTAAACTTGG
    GGCAACTGCC GGACTCAGAC TTATTGGAGA TGAAAAGGCG AACCAGATTC
    TTGAAGCGGT TAGGGATGTA GTCCACACCA AGAGCAAATA TCAGTATAAC
    CCGAACTGGA TCAACGTTCT TGAGGGATCC CAGGAAGGGT CATACATATG
    GGTTGCTCTG AATTATCTCC TGGATAAATT GGGAGGAGAC TACTCTAAAA
    CCGTAGGGGT GGTTGATCTT GGAGGTGGAT CCGTACAAAT GGCATACGCC
    ATCTCATCAA ACACCGCTGC TACCGCTCCA AAGGTGCCCG AAGGAAAAGA
    TTCCTATGTT GTGAAGGAGT ATCTCAAGGG AAAAGATTAT AACATTTATG
    TGCACAGCTA TTTGCACTAT GGCGGTTTTG CTTCTCGCGC GCACATCCTA
    GAGAGAAAGG ATGGACCATT TAGCAACTGC ATGCTGCGCG GATTCAGTGG
    TAACTTCACC TACAACGGCA AGCAGTACGA CGCAACGGCC GCACCACAAG
    GTGCAGACTA CCACAAGTGC AGAGAAGAAG TAGTGAAGTT ACTGAAGGTG
    AATGCGCCCT GCGAAACCAA GAACTGCAGC TTCAATGGCG TCTGGAACGG
    TGGTGGCGGA GCAGGGCAGG ATGACCTCTA CGTTGCGTCC GCCTTCTACT
    ACATAGCCTC CCATGTTGGG TTCATCAACA GCGATGCACC CAGTGCGAAG
    TCAACCCCTG CAACGTTTAA GGCTGTTGCA GAAAAGGTTT GTAAACTGAG
    TGTCAAAGAA GCAAAAGTAG AATACCCCAA CGTTCGTGAT CATGCCTACT
    TATGCATGGA TCTTATCTAC GAATACTCCT TGCTCGTTGA CGGCTTCGGT
    CTACATCCAA GTAAGGAGAT AACGCTGGTA GACAAGGTGA AGCATGGGGA
    GTACTACATT GACGCGGCTT GGCCATTGGG TACAGCTATT GAAGCTGTGT
    CACCCAAAAA ACGGCTTCGA GAAATATACA AATGATCTTG AGATCGATGT
    ACTAGCTACT TTGGAAGTTA GGATATCGAT TGTTGTATGA TCGATGTCTG
    TGTGCTGGTT ATTACAGTAT AACTGAGTAT CATGATATAT AAGTAGTATG
    TTAATAATGG GTCGAGCTAT CAATAGATCG AGGCGGCCAT GCTCTTTGTC
    CTAGACTCCA AGTTGTGTAT GTTTGAATAT ATAGCAGCTT TCTATATATA
    ATTACGTACT ATCACAGAAA TCATCGGTTG TGTTTGTGTG TCATGAGCAC
    GCATGTCTTG TATGTAAAAG ACTGAACATC TGGTGCACAT TTGAGTATTT
    GACCTG

    Gene models with high sequence identity

    1. AT3G04080.1 [+] show detail - apyrase 1
      E-value: 4e-116; Score: 415.00

     

    InterPro Scan Digest

    Program Description E-value
    PatternScan Nucleoside phosphatase GDA1/CD39 0
    HMMPfam Nucleoside phosphatase GDA1/CD39 2e-108
    HMMPanther ADENOSINE DIPHOSPHATASE 2.6e-171
    HMMPanther Nucleoside phosphatase GDA1/CD39 2.6e-171

    See the detailed result >

    AT3G04080.1

    Model type
    Protein coding
    Short Description
    apyrase 1
    Curator Summary
    Encodes an enzyme with ATPase and ADPase activity (an apyrase) that when mutated in combination with ATAPY2 causes a complete inhibition of pollen germination.
    Computational Description
    apyrase 1 (APY1); CONTAINS InterPro DOMAIN/s: Nucleoside phosphatase GDA1/CD39 (InterPro:IPR000407); BEST Arabidopsis thaliana protein match is: apyrase 2 (TAIR:AT5G18280.1); Has 1435 Blast hits to 1431 proteins in 229 species: Archae - 0; Bacteria - 35; Metazoa - 605; Fungi - 313; Plants - 348; Viruses - 0; Other Eukaryotes - 134 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR