K40548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K40548

Determination of introduced cDNA(s)

  • J033117J15 - Rice Full-length cDNAs - Original: J033117J15

    full reading [+] show sequence

    Nucleotide sequence: J033117J15 - full reading 
    GCTGGTTTTG CAAACATCCC ACACACACAC AAAGCAGTGA CAGTGAGTGC 
    CAATGCTGAG CTCTTGTGGT GGCCATGGCC ATGGAAATCC AAGAAGCTTG 
    CAAGAAGAAC ACCATGGCAG ATGTGGTGAG CAGCAAGGTG GAGGAGGAGG 
    AGGAGGGCAA GAGCAAGAGC AAGATGGGTT CTTGGTGAGA GAGGCAAGGG 
    CATCCCCACC ATCTCCATCT TCTTCATCAT TTCTTGGATC CACAAGCTCT 
    TCTTGTTCTG GAGGAGGAGG AGGAGGGCAG ATGTTGAGCT TCTCCTCCCC 
    CAATGGAACA GCAGGGTTGG GCTTGAGCTC AGGAGGAAGC ATGCAGGGGG 
    TCTTGGCAAG GGTCAGGGGG CCGTTCACCC CAACACAGTG GATGGAGCTG 
    GAGCACCAGG CACTGATCTA CAAGCACATT GCTGCAAATG TTTCTGTCCC 
    TTCCAGCTTG CTCCTCCCCA TCAGGAGAAG CCTCCATCCA TGGGGTACTA 
    CCTTTTTTAT TCAGCTCATG TGATTGTTAT TCTGTTCTGC GTCATATCCC 
    CTTTCTGTTG TAAATAGCTC AAGATAGGAA TAAAGGAATA AGTACTTAGA 
    AAATATGAAA GAAGAAAATG CAGGTCATAT GGTTGCAGTT GCCTGTTAGT 
    TTCAGATGTA TAAAGGTGTC CCAGATTGGG GTTCTGTTGT GTTGAGGTTG 
    GTAGTTATAT CTTGTTGTCT TTCTTGGGAC AGGATGGCTT TGTGATTAAT 
    TAGTTTGTAA AGGCAGTAAT CGAAGTCCCT TTCTGGTACT AAAAGCAGTA 
    TTGGCTGCAA ATCTAGGCAT TATAATGATT TGAAGATTGC ATTGATACTA 
    GAAATGTACT GCTTTTGGAT GTTTGCATGA TGCTCATGTG CTAATATTTC 
    CAGTTACCAA TGTGGTGCTT CTTGAGTTTA GATATAAAAC TCTTCTCTTA 
    CATTGGGATT CTGATTTTTT TTTAGTTGTG CCTCTAGTCT TTTCCACAAC 
    AAGATCTCCA AATGTAGTCA TAAAGTGTTC TGATTCCCTT TAACTGGCGT 
    CATGTTTGGT ATGTACAAAC TAAGTTCTTA TGCAGACCTG GGAGGAATGT 
    TGCTGAAATA GTGCAAGAAT ATATCGTTTT GAGGTGGTTT ATATATTTCT 
    GACATGAAAT GGGCATTCTA TTTTGCACCA GGATGGGGAT CATTCCCTCC 
    TGGCTGTGCT GATGTAGAAC CCAGAAGATG CCGCCGCACA GACGGCAAGA 
    AGTGGCGGTG CTCCAGAGAT GCTGTTGGGG ATCAGAAGTA TTGTGAGCGA 
    CACATAAACC GTGGTCGCCA TCGTTCAAGA AAGCATGTGG AAGGCCGAAA 
    GGCGACACTC ACCATTGCAG AACCATCCAC GGTTATTGCT GCTGGTGTAT 
    CATCTCGCGG CCACACTGTG GCTCGGCAGA AGCAGGTGAA AGGCTCAGCT 
    GCTACTGTCT CTGATCCTTT CTCGAGACAA TCCAACAGGA AATTTCTGGA 
    GAAACAGAAC GTTGTCGACC AATTGTCTCC CATGGATTCA TTTGATTTCT 
    CATCCACACA ATCTTCTCCA AACTATGACA ATGTAGCATT GTCACCACTG 
    AAGTTGCACC ATGATCATGA TGAATCTTAC ATCGGGCATG GAGCAGGCAG 
    TTCATCAGAA AAAGGCAGTA TGATGTACGA AAGTCGGTTA ACAGTCTCTA 
    AGGAAACACT TGATGATGGA CCTTTAGGTG AAGTTTTCAA AAGAAAGAAT 
    TGCCAATCAG CTTCTACAGA AATCTTAACT GAAAAATGGA CTGAGAACCC 
    CAACTTACAT TGCCCATCTG GAATCCTACA AATGGCTACT AAGTTCAATT 
    CAATTTCCAG CGGCAACACA GTAAATAGTG GTGGCACCGC AGTGGAGAAT 
    CTTATCACTG ATAATGGATA TCTTACTGCA AGAATGATGA ATCCTCATAT 
    TGTCCCAACA CTTCTCTAAG GCTGTGTTTG AAAGTTCATG TTGGATTCGC 
    AAATGATTGA AAGTACGTTT ATGGATGGTT CTATAAGTTC CTGTTGTTTC 
    CTTCGTTATG TGTTCTTGTG TTCCTCACCT TTTTATCTTT TGGTTGAGGT 
    TGGTATGTTG TAATTTTCTC CTGTGCTACC TTGTAATATG CTGAAGTTAA 
    ATGCTCTTCT

    Gene models with high sequence identity

    1. AT2G22840.1 [+] show detail - growth-regulating factor 1
      E-value: 6e-22; Score: 103.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutamine-Leucine-Glutamine, QLQ 1e-16
    HMMPfam WRC 2.2e-20

    See the detailed result >

    AT2G22840.1

    Model type
    Protein coding
    Short Description
    growth-regulating factor 1
    Curator Summary
    Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower
    Computational Description
    growth-regulating factor 1 (GRF1); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 2 (TAIR:AT4G37740.1); Has 714 Blast hits to 669 proteins in 68 species: Archae - 0; Bacteria - 24; Metazoa - 65; Fungi - 20; Plants - 548; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR