K40548

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40548

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage
Phenotypes
T1  
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
rosette leaf (PO:0000014)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
  • abnormal (PATO:0000460)
    (Stem::Others)
T2  
whole plant (PO:0000003)
  • decreased height (PATO:0000569)
    (Adult plant::Plant height::short)
cauline leaf (PO:0000013)
  • decreased width (PATO:0000599)
    (Cauline leaf::Shape::narrow)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • abnormal (PATO:0000460)
    (Rosette leaf::Others)
seed (PO:0009010)
  • increased size (PATO:0000586)
    (Seed::Shape::large)
  • increased length (PATO:0000573)
    (Seed::Shape::long)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K40548

Determination of introduced cDNA(s)

  • J033117J15 - Rice Full-length cDNAs - Original: J033117J15

    full reading [+] show sequence

    Nucleotide sequence: J033117J15 - full reading
    GCTGGTTTTG CAAACATCCC ACACACACAC AAAGCAGTGA CAGTGAGTGC 
    CAATGCTGAG CTCTTGTGGT GGCCATGGCC ATGGAAATCC AAGAAGCTTG
    CAAGAAGAAC ACCATGGCAG ATGTGGTGAG CAGCAAGGTG GAGGAGGAGG
    AGGAGGGCAA GAGCAAGAGC AAGATGGGTT CTTGGTGAGA GAGGCAAGGG
    CATCCCCACC ATCTCCATCT TCTTCATCAT TTCTTGGATC CACAAGCTCT
    TCTTGTTCTG GAGGAGGAGG AGGAGGGCAG ATGTTGAGCT TCTCCTCCCC
    CAATGGAACA GCAGGGTTGG GCTTGAGCTC AGGAGGAAGC ATGCAGGGGG
    TCTTGGCAAG GGTCAGGGGG CCGTTCACCC CAACACAGTG GATGGAGCTG
    GAGCACCAGG CACTGATCTA CAAGCACATT GCTGCAAATG TTTCTGTCCC
    TTCCAGCTTG CTCCTCCCCA TCAGGAGAAG CCTCCATCCA TGGGGTACTA
    CCTTTTTTAT TCAGCTCATG TGATTGTTAT TCTGTTCTGC GTCATATCCC
    CTTTCTGTTG TAAATAGCTC AAGATAGGAA TAAAGGAATA AGTACTTAGA
    AAATATGAAA GAAGAAAATG CAGGTCATAT GGTTGCAGTT GCCTGTTAGT
    TTCAGATGTA TAAAGGTGTC CCAGATTGGG GTTCTGTTGT GTTGAGGTTG
    GTAGTTATAT CTTGTTGTCT TTCTTGGGAC AGGATGGCTT TGTGATTAAT
    TAGTTTGTAA AGGCAGTAAT CGAAGTCCCT TTCTGGTACT AAAAGCAGTA
    TTGGCTGCAA ATCTAGGCAT TATAATGATT TGAAGATTGC ATTGATACTA
    GAAATGTACT GCTTTTGGAT GTTTGCATGA TGCTCATGTG CTAATATTTC
    CAGTTACCAA TGTGGTGCTT CTTGAGTTTA GATATAAAAC TCTTCTCTTA
    CATTGGGATT CTGATTTTTT TTTAGTTGTG CCTCTAGTCT TTTCCACAAC
    AAGATCTCCA AATGTAGTCA TAAAGTGTTC TGATTCCCTT TAACTGGCGT
    CATGTTTGGT ATGTACAAAC TAAGTTCTTA TGCAGACCTG GGAGGAATGT
    TGCTGAAATA GTGCAAGAAT ATATCGTTTT GAGGTGGTTT ATATATTTCT
    GACATGAAAT GGGCATTCTA TTTTGCACCA GGATGGGGAT CATTCCCTCC
    TGGCTGTGCT GATGTAGAAC CCAGAAGATG CCGCCGCACA GACGGCAAGA
    AGTGGCGGTG CTCCAGAGAT GCTGTTGGGG ATCAGAAGTA TTGTGAGCGA
    CACATAAACC GTGGTCGCCA TCGTTCAAGA AAGCATGTGG AAGGCCGAAA
    GGCGACACTC ACCATTGCAG AACCATCCAC GGTTATTGCT GCTGGTGTAT
    CATCTCGCGG CCACACTGTG GCTCGGCAGA AGCAGGTGAA AGGCTCAGCT
    GCTACTGTCT CTGATCCTTT CTCGAGACAA TCCAACAGGA AATTTCTGGA
    GAAACAGAAC GTTGTCGACC AATTGTCTCC CATGGATTCA TTTGATTTCT
    CATCCACACA ATCTTCTCCA AACTATGACA ATGTAGCATT GTCACCACTG
    AAGTTGCACC ATGATCATGA TGAATCTTAC ATCGGGCATG GAGCAGGCAG
    TTCATCAGAA AAAGGCAGTA TGATGTACGA AAGTCGGTTA ACAGTCTCTA
    AGGAAACACT TGATGATGGA CCTTTAGGTG AAGTTTTCAA AAGAAAGAAT
    TGCCAATCAG CTTCTACAGA AATCTTAACT GAAAAATGGA CTGAGAACCC
    CAACTTACAT TGCCCATCTG GAATCCTACA AATGGCTACT AAGTTCAATT
    CAATTTCCAG CGGCAACACA GTAAATAGTG GTGGCACCGC AGTGGAGAAT
    CTTATCACTG ATAATGGATA TCTTACTGCA AGAATGATGA ATCCTCATAT
    TGTCCCAACA CTTCTCTAAG GCTGTGTTTG AAAGTTCATG TTGGATTCGC
    AAATGATTGA AAGTACGTTT ATGGATGGTT CTATAAGTTC CTGTTGTTTC
    CTTCGTTATG TGTTCTTGTG TTCCTCACCT TTTTATCTTT TGGTTGAGGT
    TGGTATGTTG TAATTTTCTC CTGTGCTACC TTGTAATATG CTGAAGTTAA
    ATGCTCTTCT

    Gene models with high sequence identity

    1. AT2G22840.1 [+] show detail - growth-regulating factor 1
      E-value: 6e-22; Score: 103.00

     

    InterPro Scan Digest

    Program Description E-value
    HMMPfam Glutamine-Leucine-Glutamine, QLQ 1e-16
    HMMPfam WRC 2.2e-20

    See the detailed result >

    AT2G22840.1

    Model type
    Protein coding
    Short Description
    growth-regulating factor 1
    Curator Summary
    Growth regulating factor encoding transcription activator. One of the nine members of a GRF gene family, containing nuclear targeting domain. Mutants result in smaller leaves indicating the role of the gene in leaf development. Expressed in root, shoot and flower
    Computational Description
    growth-regulating factor 1 (GRF1); CONTAINS InterPro DOMAIN/s: Glutamine-Leucine-Glutamine, QLQ (InterPro:IPR014978), WRC (InterPro:IPR014977); BEST Arabidopsis thaliana protein match is: growth-regulating factor 2 (TAIR:AT4G37740.1); Has 714 Blast hits to 669 proteins in 68 species: Archae - 0; Bacteria - 24; Metazoa - 65; Fungi - 20; Plants - 548; Viruses - 4; Other Eukaryotes - 53 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR