K40923

RIKEN rice full-length cDNA overexpressed Arabidopsis lines

Original: K40923

Phenotypes

Morphological phenotypes

Generation Anatomical entity
/structure development stage		 Phenotypes
T1  
cauline leaf (PO:0000013)
  • dark green (PATO:0001249)
    (Cauline leaf::Color::dark)
rosette leaf (PO:0000014)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • decreased width (PATO:0000599)
    (Rosette leaf::Shape::narrow)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • present in greater numbers in organism (PATO:0000470)
    (Rosette leaf::Number::many)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)
stem (PO:0009047)
  • increased thickness (PATO:0000591)
    (Stem::Shape::thick)
T2  
whole plant (PO:0000003)
  • increased height (PATO:0000570)
    (Adult plant::Plant height::tall)
cauline leaf (PO:0000013)
  • decreased size (PATO:0000587)
    (Cauline leaf::Shape::small)
  • present in fewer numbers in organism (PATO:0001997)
    (Cauline leaf::Number::few)
rosette leaf (PO:0000014)
  • decreased size (PATO:0000587)
    (Rosette leaf::Shape::small)
  • increased length (PATO:0000573)
    (Rosette leaf::Shape::long)
  • increased width (PATO:0000600)
    (Rosette leaf::Shape::wide)
  • epinastic (PATO:0000945)
    (Rosette leaf::Shape::epinastic)
  • dark green (PATO:0001249)
    (Rosette leaf::Color::dark)
  • desaturated green (PATO:0001272)
    (Rosette leaf::Color::pale)
whole plant flowering stage (PO:0007016)
  • late (PATO:0000693)
    (Adult plant::Flowering::late)
sporophyte vegetative stage (PO:0007134)
  • decreased speed (PATO:0000304)
    (Adult plant::Growth::slow)

Invisible phenotypes

Specific phenotypes were NOT observed.

Original: K40923

Determination of introduced cDNA(s)

  • J013106B15 - Rice Full-length cDNAs - Original: J013106B15

    full reading [+] show sequence

    Nucleotide sequence: J013106B15 - full reading 
    GGGTCTCCCT TTGCTTCTTC CGTTGCAATT CCATTCTCCT CTCTCTCCTG 
    CTTCTCTCTC TCCTCCTCTT CTTCACCTCC TCTTGTCTGT CCATAGATCG 
    AGCCGCTCAG ACCAAATCTT GGATGCGTTC TCTCTTCTTT CTCGCTGCGA 
    GGGAGGCGGG TTGTTCGATC TGCGGGTGAA ATCGAGCGAG AGATCCCTAG 
    ACCTCCCCCT ACTTCTCTGT AGCTGTACAT ATTTCAAGAG AGGAAATTTT 
    GGGCTGGTTT CTGATACGGT TCGAGAAGAT TTTTGGCAAT TTCTTCGGAT 
    TTTCCTCCCC TTGTGGGTTC CTTGGTTCAT TGAGAAGAAT CAAATGGGTG 
    ATGTGTCAGT CAATCGACCG ATCAAGGCGG AGCCAGCTGC AGGCGGCATT 
    GCTCAGGGCA ATCGAATCCT GGACATGATG TCGTCAGGGT GGACAGATGA 
    GCGGCACATG CATTATATAA GCTCAATGGA GGCTTCTTTC GTTGAGCAAC 
    TCTACAATCA CGAACAAAAT GATGCTGGCA ACGGATTCAA GGTTCTCCGT 
    GGTGGGGTGT GGGAGAAACT CAAATTTGAT CGGACCAGTG CTTGCTCACG 
    GATCGGGAGA AAATACTGCC TGCCCGCAAG CCCCTGGATC CAGCATTTCA 
    GGCCGCGCGA ATGCAGTAGC AATGCAAGGA ATGATGCGGC GGAGGCTTTA 
    GTGGGTGATC ATGAATCTGG TATTCAGACT ATCCAAGGGA GGACTCCGTT 
    GTCACATGGA AGGGAGTGGG AGGCTTGCAA GGAAGAAAAA GCTGTTGGTG 
    AAAGTACAGA GGTCTCTGAT CAGAATTTTG CTGATGATGA GGCGGAGGTT 
    GATGCAGAAT CAAGCAAAGC ATGCAAGAGA AGGAAGTTAA GAAGTGCTCT 
    TACACGGAAT TACCAAGTTG TTCCATCTGA CAAACTGTTT GCTTCCACAA 
    AAGCTGATGG AAGGAAAGAT GCTCCAGAGT AAGGCATGCA AGAGTGGATC 
    TGGTTGAATA TGCAGTCAAT GAGAACTGGA TGAGTTAGTA TTGGCGATTT 
    AGTAGTATAG TTCTGAACTC TGTAGAGTCT GTCTTGGTAG AAGAATAATA 
    GGATCGATCA CTCACAACAT GGTAGATTTA TTGTTTGATC ATATTGTTGT 
    AATGGTTTTT TTTTGTGTGT GTTGCTGTGT TCTGGCAACT GTTTGTTTGC 
    AATGTGAGTA ATATGTTTAT GTTTGCCACA AGATGAGAAT GATGCAAAGC 
    CCATCATTCC TTTTGCCATA ATTCCATTGT ACATACATGT ACTCCCATCA 
    TGATATTGAG AATGAAAGAT CACCAATTTT GCAGAATG

    Gene models with high sequence identity

    1. AT5G42900.2 [+] show detail - cold regulated gene 27
      E-value: 2e-13; Score: 74.30

     

    InterPro Scan Digest

    See the detailed result >

    AT5G42900.2

    Model type
    Protein coding
    Short Description
    cold regulated gene 27
    Computational Description
    cold regulated gene 27; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G33980.1); Has 74 Blast hits to 74 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 74; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
    Link
    InterPro Scan - TAIR